RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 PDIA2Q13087 525 aaKnown RBP16.88■□□□□ 0.29
COL7A1-202ENST00000422991 FASTKD3Q14CZ7 662 aaKnown RBP16.88■□□□□ 0.29
COL7A1-202ENST00000422991 ATP13A5Q4VNC0 1218 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 PLA2G2CQ5R387 149 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 TPRG1LQ5T0D9 272 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 CES3Q6UWW8 571 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 Q6ZSR6 202 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 MICALCLQ6ZW33 695 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 TMEM135Q86UB9 458 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 SLC22A18ASQ8N1D0 253 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 IFT81Q8WYA0 676 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 HDAC10Q969S8 669 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 FUBP1Q96AE4 644 aaKnown RBP16.88■□□□□ 0.29
COL7A1-202ENST00000422991 ZNF669Q96BR6 464 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-202ENST00000422991 KLHDC7BQ96G42 594 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 VPS35Q96QK1 796 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 NAT9Q9BTE0 207 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 SUDS3Q9H7L9 328 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-202ENST00000422991 CAPN10Q9HC96 672 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 PHPT1Q9NRX4 125 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-202ENST00000422991 SMOXQ9NWM0 555 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 TMPRSS11EQ9UL52 423 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 CNOT6Q9ULM6 557 aaKnown RBP16.88■□□□□ 0.29
COL7A1-202ENST00000422991 CHMP2BQ9UQN3 213 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 TMEM131Q92545 1883 aa16.88■□□□□ 0.29
COL7A1-202ENST00000422991 A0A1B0GVT2 93 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 PATE3B3GLJ2 98 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 TLR4O00206 839 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 USP1O94782 785 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 CFIP05156 583 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 MYCLP1P12525 358 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-202ENST00000422991 NXPH1P58417 271 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 BNC1Q01954 994 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 NFATC2Q13469 925 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 ITGA9Q13797 1035 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 HLTFQ14527 1009 aaKnown RBP eCLIP16.87■□□□□ 0.29
COL7A1-202ENST00000422991 NFATC4Q14934 902 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 CCDC6Q16204 474 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 ANKRD20A4Q4UJ75 823 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 HP1BP3Q5SSJ5 553 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-202ENST00000422991 KIAA0930Q6ICG6 404 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-202ENST00000422991 SLC23A3Q6PIS1 610 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 AFTPHQ6ULP2 937 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 DCLK2Q8N568 766 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 GPR161Q8N6U8 529 aaKnown RBP16.87■□□□□ 0.29
COL7A1-202ENST00000422991 GLYATL1Q969I3 302 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 COX14Q96I36 57 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 HIC2Q96JB3 615 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 FCRL3Q96P31 734 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-202ENST00000422991 LGR4Q9BXB1 951 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 ANKZF1Q9H8Y5 726 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 SAYSD1Q9NPB0 183 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 RPS6KL1Q9Y6S9 549 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 DMXL1Q9Y485 3027 aa16.87■□□□□ 0.29
COL7A1-202ENST00000422991 ADAMTS9Q9P2N4 1935 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 ZCWPW2A0A1B0GU75 182 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 OR51F1A6NGY5 319 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 AGAP14A8MT82 685 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 CACNB4O00305 520 aaPredicted RBP16.86■□□□□ 0.29
COL7A1-202ENST00000422991 INPP4BO15327 924 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 UGT1A9O60656 530 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 MAGEC1O60732 1142 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 TTC4O95801 387 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 GOT2P00505 430 aaKnown RBP16.86■□□□□ 0.29
COL7A1-202ENST00000422991 POLBP06746 335 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 UGT1A6P19224 532 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 ITGALP20701 1170 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 UGT1A1P22309 533 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 UGT1A4P22310 534 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 ARNTP27540 789 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 FOXN2P32314 431 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 CA5AP35218 305 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 UGT1A3P35503 534 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 UGT1A5P35504 534 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 THOP1P52888 689 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 C21orf59P57076 290 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 PRAMEP78395 509 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 CACNG1Q06432 222 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 PDE1CQ14123 709 aaPredicted RBP16.86■□□□□ 0.29
COL7A1-202ENST00000422991 CRYMQ14894 314 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 TRIM61Q5EBN2 209 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 STEAP4Q687X5 459 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 MACC1Q6ZN28 852 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 SNX20Q7Z614 316 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 TRIM74Q86UV6 250 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 CCDC25Q86WR0 208 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 SPATS2Q86XZ4 545 aaKnown RBP16.86■□□□□ 0.29
COL7A1-202ENST00000422991 DCP2Q8IU60 420 aaKnown RBP16.86■□□□□ 0.29
COL7A1-202ENST00000422991 PHYKPLQ8IUZ5 450 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 CCNJLQ8IV13 435 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 ANKMY2Q8IV38 441 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 ZBED8Q8IZ13 594 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 FBXO36Q8NEA4 188 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 ZNF398Q8TD17 642 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 BTN2A2Q8WVV5 523 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 SKA1Q96BD8 255 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 SGSM3Q96HU1 749 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 FMO2Q99518 471 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 SMOC1Q9H4F8 434 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 ASB8Q9H765 288 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms