RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 P3H2Q8IVL5 708 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 EFCAB13Q8IY85 973 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 SYCE1Q8N0S2 351 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 MYO1HQ8N1T3 1032 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 FSTL5Q8N475 847 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 METTL25Q8N6Q8 603 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 BEST2Q8NFU1 509 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 MYRIPQ8NFW9 859 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 OR5B17Q8NGF7 314 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 LMO3Q8TAP4 145 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 LNX1Q8TBB1 728 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 SHC3Q92529 594 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 TAF4BQ92750 862 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 SNX27Q96L92 541 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 WDR24Q96S15 920 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 RPS6KC1Q96S38 1066 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 AGPAT1Q99943 283 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 DNAI2Q9GZS0 605 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 FAM83DQ9H4H8 585 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 ASB7Q9H672 318 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 PTPRHQ9HD43 1115 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 TRIM36Q9NQ86 728 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 STARD7Q9NQZ5 370 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 GOLGA6AQ9NYA3 693 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 DNAJB11Q9UBS4 358 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 ZNF212Q9UDV6 495 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 STEAP1Q9UHE8 339 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 TFR2Q9UP52 801 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 C2CD2Q9Y426 696 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 CEP83Q9Y592 693 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 PCDHGB6Q9Y5F9 930 aa3.96□□□□□ -1.78
HMGB3P20-201ENST00000417997 MYH10P35580 1976 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 MYO16Q9Y6X6 1858 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 A0A0U1RQG5 324 aaPredicted RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 A0A1B0GUA9 196 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 FAM170AA1A519 330 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 KRTAP29-1A8MX34 341 aaPredicted RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 LACTBL1A8MY62 500 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 CLIC1O00299 241 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 FOXN3O00409 490 aaPredicted RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 TPP1O14773 563 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ZNF263O14978 683 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 MED7O43513 233 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 TSPAN6O43657 245 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 RTN2O75298 545 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 SGPL1O95470 568 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ASS1P00966 412 aaKnown RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ATP1A1P05023 1023 aaKnown RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 IQCF3P0C7M6 154 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 CYP11B1P15538 503 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ADRA1DP25100 572 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 HOXC8P31273 242 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ATICP31939 592 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 NSFP46459 744 aaKnown RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 DNA2P51530 1060 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ACLYP53396 1101 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 GALCP54803 685 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 MYL6P60660 151 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 YPEL5P62699 121 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 FAM193AP78312 1265 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 RBP5P82980 135 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 TXNL4AP83876 142 aaKnown RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 CDR2Q01850 454 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 DEUP1Q05D60 604 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ITGA7Q13683 1181 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 TUBB2AQ13885 445 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 SEC23BQ15437 767 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ST3GAL2Q16842 350 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 WHAMMP3Q1A5X7 153 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ASTE1Q2TB18 679 aaPredicted RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 GLRA4Q5JXX5 417 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 TEX35Q5T0J7 233 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 MAP3K21Q5TCX8 1036 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 PLAG1Q6DJT9 500 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ANO7Q6IWH7 933 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 TMEM270Q6UE05 265 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 SERINC5Q86VE9 423 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 SLC47A2Q86VL8 602 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 FAM228AQ86W67 206 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ZNF677Q86XU0 584 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 FAM71AQ8IYT1 594 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 TTC39CQ8N584 583 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 RNF10Q8N5U6 811 aaKnown RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 CEP112Q8N8E3 955 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 FAM71DQ8N9W8 422 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 MSANTD4Q8NCY6 345 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 KLHDC9Q8NEP7 349 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 C16orf52Q8NHV5 167 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 SLC20A1Q8WUM9 679 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 RFFLQ8WZ73 363 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 GOLGA1Q92805 767 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ZNF653Q96CK0 615 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ZC3H10Q96K80 434 aaKnown RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 TMEM79Q9BSE2 394 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 TUBB2BQ9BVA1 445 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 CARD6Q9BX69 1037 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 EIF2AQ9BY44 585 aaKnown RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 GPR88Q9GZN0 384 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 NXF3Q9H4D5 531 aaKnown RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms