RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 FEM1AQ9BSK4 669 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 C9orf16Q9BUW7 83 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 PRRG3Q9BZD7 231 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 SMURF2Q9HAU4 748 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 PIGVQ9NUD9 493 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 TIMM22Q9Y584 194 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 HSPA1AP0DMV8 641 aaKnown RBP12.92□□□□□ -0.34
PTPRN-202ENST00000409251 HSPA1BP0DMV9 641 aaKnown RBP12.92□□□□□ -0.34
PTPRN-202ENST00000409251 KCNA5P22460 613 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 KYAT1Q16773 422 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 SLC39A12Q504Y0 691 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 SPESP1Q6UW49 350 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 CUZD1Q86UP6 607 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 MIB1Q86YT6 1006 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 PLD3Q8IV08 490 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 FIG4Q92562 907 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 BHMTQ93088 406 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 DEFB118Q96PH6 123 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 SLC2A11Q9BYW1 496 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 ANKRD60Q9BZ19 345 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 RERGLQ9H628 205 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 MTRRQ9UBK8 725 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 MID2Q9UJV3 735 aa12.92□□□□□ -0.34
PTPRN-202ENST00000409251 EEF2KO00418 725 aaKnown RBP12.91□□□□□ -0.34
PTPRN-202ENST00000409251 TFECO14948 347 aaPredicted RBP12.91□□□□□ -0.34
PTPRN-202ENST00000409251 SNPHO15079 494 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 TIMM44O43615 452 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 ADAMTS4O75173 837 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 DEAF1O75398 565 aaPredicted RBP12.91□□□□□ -0.34
PTPRN-202ENST00000409251 FSHRP23945 695 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 NIPAL4Q0D2K0 466 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 SERINC5Q86VE9 423 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 CEP97Q8IW35 865 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 SFRP1Q8N474 314 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 NUDT8Q8WV74 236 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 HEXDCQ8WVB3 486 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 IRGQQ8WZA9 623 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 SEPT8Q92599 483 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 TANKQ92844 425 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 SMOQ99835 787 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 SEPT3Q9UH03 358 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 MTF2Q9Y483 593 aaPredicted RBP12.91□□□□□ -0.34
PTPRN-202ENST00000409251 CPQQ9Y646 472 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 NUP214P35658 2090 aaPredicted RBP12.91□□□□□ -0.34
PTPRN-202ENST00000409251 TRIM64CA6NLI5 447 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 HS6ST1O60243 411 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 BMP10O95393 424 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 GFAPP14136 432 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 RPL17P18621 184 aaKnown RBP12.91□□□□□ -0.34
PTPRN-202ENST00000409251 TAS2R39P59534 338 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 MAPRE2Q15555 327 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 EPHX4Q8IUS5 362 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 DBF4BQ8NFT6 615 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 PPM1MQ96MI6 270 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 SLC2A6Q9UGQ3 507 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 PRUNE2Q8WUY3 3088 aa12.91□□□□□ -0.34
PTPRN-202ENST00000409251 INMTO95050 263 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 SEC24AO95486 1093 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 TBX18O95935 607 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 ENO2P09104 434 aaPredicted RBP12.9□□□□□ -0.34
PTPRN-202ENST00000409251 AGXTP21549 392 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 NOGQ13253 232 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 OVOS1Q6IE37 1185 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 ESRP1Q6NXG1 681 aaKnown RBP12.9□□□□□ -0.34
PTPRN-202ENST00000409251 OR10T2Q8NGX3 314 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 SLC25A23Q9BV35 468 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 ROGDIQ9GZN7 287 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 MID1IP1Q9NPA3 183 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 SCN4AP35499 1836 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 EYSQ5T1H1 3165 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 NOTOA8MTQ0 251 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 AHSGP02765 367 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 DBTP11182 482 aaKnown RBP12.9□□□□□ -0.34
PTPRN-202ENST00000409251 GTF2E2P29084 291 aaKnown RBP12.9□□□□□ -0.34
PTPRN-202ENST00000409251 CLK1P49759 484 aaKnown RBP12.9□□□□□ -0.34
PTPRN-202ENST00000409251 CDC42EP1Q00587 391 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 BROXQ5VW32 411 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 NCBP2-AS2Q69YL0 99 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 ERMP1Q7Z2K6 904 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 MILR1Q7Z6M3 343 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 UBE2J2Q8N2K1 259 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 CNTD1Q8N815 330 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 FSD1LQ9BXM9 530 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 AMBNQ9NP70 447 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 TMEM98Q9Y2Y6 226 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 NDUFAF1Q9Y375 327 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 LOC100506127A0A0U1RQW1 187 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 CCRL2O00421 344 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 NME4O00746 187 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 GSTA4O15217 222 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 ASNA1O43681 348 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 TUBA4AP68366 448 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 SIM2Q14190 667 aaPredicted RBP12.9□□□□□ -0.34
PTPRN-202ENST00000409251 CYP4V2Q6ZWL3 525 aaPredicted RBP12.9□□□□□ -0.34
PTPRN-202ENST00000409251 VASH1Q7L8A9 365 aaPredicted RBP12.9□□□□□ -0.34
PTPRN-202ENST00000409251 ITIH5Q86UX2 942 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 APBB2Q92870 758 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 FUNDC2Q9BWH2 189 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 DUSP16Q9BY84 665 aa12.9□□□□□ -0.34
PTPRN-202ENST00000409251 XIRP2A4UGR9 3374 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms