RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 VPS35Q96QK1 796 aa29.14■■■□□ 2.26
USP42-202ENST00000404008 SUDS3Q9H7L9 328 aaPredicted RBP29.14■■■□□ 2.26
USP42-202ENST00000404008 PARD6AQ9NPB6 346 aa29.14■■■□□ 2.26
USP42-202ENST00000404008 FAM114A2Q9NRY5 505 aa29.14■■■□□ 2.26
USP42-202ENST00000404008 SEMA4GQ9NTN9 838 aa29.14■■■□□ 2.26
USP42-202ENST00000404008 SNX11Q9Y5W9 270 aa29.14■■■□□ 2.26
USP42-202ENST00000404008 SPTY2D1-AS1A0A0U1RR47 76 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 CACNB4O00305 520 aaPredicted RBP29.13■■■□□ 2.25
USP42-202ENST00000404008 INPP4BO15327 924 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 BANF1O75531 89 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 MC4RP32245 332 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 CBLBQ13191 982 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 ITGA9Q13797 1035 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 CSRP2Q16527 193 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 BBS9Q3SYG4 887 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 MACC1Q6ZN28 852 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 DCLK2Q8N568 766 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 TMPRSS11EQ9UL52 423 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 MAD1L1Q9Y6D9 718 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 FAM237BA0A1B0GVD1 139 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 ARHGAP33O14559 1287 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 GPR39O43194 453 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 TGM1P22735 817 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 PTK2BQ14289 1009 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 FZD2Q14332 565 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 SF3A2Q15428 464 aaKnown RBP29.13■■■□□ 2.25
USP42-202ENST00000404008 ZNF398Q8TD17 642 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 BTN2A2Q8WVV5 523 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 GLYATL1Q969I3 302 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 HDAC10Q969S8 669 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 MFSD3Q96ES6 412 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 STAMBPL1Q96FJ0 436 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 TRIM56Q9BRZ2 755 aaKnown RBP29.13■■■□□ 2.25
USP42-202ENST00000404008 ZDHHC5Q9C0B5 715 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 GDF3Q9NR23 364 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 ZDHHC18Q9NUE0 388 aa29.13■■■□□ 2.25
USP42-202ENST00000404008 CCDC162PA2VCL2 907 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 E7ESA3 106 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 SYPP08247 313 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 RHOXF2BP0C7M4 288 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 HTR1BP28222 390 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 NFATC2Q13469 925 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 CES3Q6UWW8 571 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 MICALCLQ6ZW33 695 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 LRRC39Q96DD0 335 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 WDR92Q96MX6 357 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 RHOXF2Q9BQY4 288 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 ASB8Q9H765 288 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 SMOXQ9NWM0 555 aa29.12■■■□□ 2.25
USP42-202ENST00000404008 LNP1A1A4G5 178 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 TMEM202A6NGA9 273 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 UGT1A9O60656 530 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 SLU7O95391 586 aaKnown RBP29.11■■■□□ 2.25
USP42-202ENST00000404008 ENGP17813 658 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 UGT1A6P19224 532 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 UGT1A1P22309 533 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 UGT1A4P22310 534 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 CA5AP35218 305 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 UGT1A3P35503 534 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 UGT1A5P35504 534 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 TMEM135Q86UB9 458 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 TRIM74Q86UV6 250 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 EBNA1BP2Q99848 306 aaKnown RBP29.11■■■□□ 2.25
USP42-202ENST00000404008 WDR83Q9BRX9 315 aaKnown RBP29.11■■■□□ 2.25
USP42-202ENST00000404008 ERVMER34-1Q9H9K5 563 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 UGT1A7Q9HAW7 530 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 UGT1A10Q9HAW8 530 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 UGT1A8Q9HAW9 530 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 TEX264Q9Y6I9 313 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 SLC30A1Q9Y6M5 507 aa29.11■■■□□ 2.25
USP42-202ENST00000404008 AGAP14A8MT82 685 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 ITGALP20701 1170 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 KELP23276 732 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 PRAMEP78395 509 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 ANKRD20A4Q4UJ75 823 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 TEX35Q5T0J7 233 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 IL27RAQ6UWB1 636 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 SNX20Q7Z614 316 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 PARGQ86W56 976 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 PHYKPLQ8IUZ5 450 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 IGDCC3Q8IVU1 814 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 FCRL3Q96P31 734 aaPredicted RBP29.1■■■□□ 2.25
USP42-202ENST00000404008 NAT9Q9BTE0 207 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 FAM129AQ9BZQ8 928 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 RPS6KL1Q9Y6S9 549 aa29.1■■■□□ 2.25
USP42-202ENST00000404008 OR51F1A6NGY5 319 aa29.09■■■□□ 2.25
USP42-202ENST00000404008 USP1O94782 785 aa29.09■■■□□ 2.25
USP42-202ENST00000404008 SLC25A14O95258 325 aaPredicted RBP29.09■■■□□ 2.25
USP42-202ENST00000404008 PGAM1P18669 254 aa29.09■■■□□ 2.25
USP42-202ENST00000404008 ELK3P41970 407 aa29.09■■■□□ 2.25
USP42-202ENST00000404008 PDIA2Q13087 525 aaKnown RBP29.09■■■□□ 2.25
USP42-202ENST00000404008 AFTPHQ6ULP2 937 aa29.09■■■□□ 2.25
USP42-202ENST00000404008 ENPP7Q6UWV6 458 aa29.09■■■□□ 2.25
USP42-202ENST00000404008 CENPUQ71F23 418 aa29.09■■■□□ 2.25
USP42-202ENST00000404008 OR56A4Q8NGH8 313 aa29.09■■■□□ 2.25
USP42-202ENST00000404008 ZNF669Q96BR6 464 aaPredicted RBP29.09■■■□□ 2.25
USP42-202ENST00000404008 SGSM3Q96HU1 749 aa29.09■■■□□ 2.25
USP42-202ENST00000404008 FAM96AQ9H5X1 160 aa29.09■■■□□ 2.25
USP42-202ENST00000404008 PNMA8BQ9ULN7 279 aaPredicted RBP29.09■■■□□ 2.25
USP42-202ENST00000404008 OAS3Q9Y6K5 1087 aaKnown RBP29.09■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms