RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 DTX3LQ8TDB6 740 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 ULK4Q96C45 1275 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 RUFY1Q96T51 708 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 FZD3Q9NPG1 666 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 MBD1Q9UIS9 605 aaPredicted RBP17.95■□□□□ 0.46
SDC1-203ENST00000403076 FBXO4Q9UKT5 387 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 TLDC2A0PJX2 215 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 SMIM23A6NLE4 172 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 NDUFS3O75489 264 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 INHBAP08476 426 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 TDGF1P13385 188 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 OGNP20774 298 aaKnown RBP17.94■□□□□ 0.46
SDC1-203ENST00000403076 AKT2P31751 481 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 SLC1A2P43004 574 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 TTPAP49638 278 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 EIF3BP55884 814 aaKnown RBP17.94■□□□□ 0.46
SDC1-203ENST00000403076 SEMA3AQ14563 771 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 IRF4Q15306 451 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 CERS6Q6ZMG9 384 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 MARK2Q7KZI7 788 aaKnown RBP17.94■□□□□ 0.46
SDC1-203ENST00000403076 STRA8Q7Z7C7 330 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 CILP2Q8IUL8 1156 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 CNTN4Q8IWV2 1026 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 PIANPQ8IYJ0 282 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 MAML2Q8IZL2 1156 aaPredicted RBP17.94■□□□□ 0.46
SDC1-203ENST00000403076 PNPLA1Q8N8W4 532 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 PLA2G15Q8NCC3 412 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 PAFAH2Q99487 392 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 CPNE1Q99829 537 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 MBNL1Q9NR56 388 aaKnown RBP17.94■□□□□ 0.46
SDC1-203ENST00000403076 FBXO6Q9NRD1 293 aaPredicted RBP17.94■□□□□ 0.46
SDC1-203ENST00000403076 SCN8AQ9UQD0 1980 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 LRRK1Q38SD2 2015 aa17.94■□□□□ 0.46
SDC1-203ENST00000403076 FADS2P1A8MWK0 482 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 K7ESM1 405 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 RAD51BO15315 384 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 INPP4BO15327 924 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 LATO43561 262 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 C1QAP02745 245 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 IGHV4-34P06331 123 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 F7P08709 466 aaPredicted RBP17.93■□□□□ 0.46
SDC1-203ENST00000403076 MPP1Q00013 466 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 LYPLAL1Q5VWZ2 237 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 PNCKQ6P2M8 343 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 KIAA0408Q6ZU52 694 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 SLC26A11Q86WA9 606 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 IQCKQ8N0W5 287 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 NXPE1Q8N323 547 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 TP53I13Q8NBR0 393 aaPredicted RBP17.93■□□□□ 0.46
SDC1-203ENST00000403076 C2CD4AQ8NCU7 369 aaPredicted RBP17.93■□□□□ 0.46
SDC1-203ENST00000403076 ZBTB9Q96C00 473 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 BIRC7Q96CA5 298 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 ZIM3Q96PE6 472 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 TCF12Q99081 682 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 PCED1AQ9H1Q7 454 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 PSAT1Q9Y617 370 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 TRBV5-4A0A0C4DH59 114 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 UBA6A0AVT1 1052 aaPredicted RBP17.93■□□□□ 0.46
SDC1-203ENST00000403076 MEI4A8MW99 385 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 FPGTO14772 594 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 RASGRF2O14827 1237 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 SLC25A14O95258 325 aaPredicted RBP17.93■□□□□ 0.46
SDC1-203ENST00000403076 BCKDHBP21953 392 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 HNRNPA2B1P22626 353 aaKnown RBP17.93■□□□□ 0.46
SDC1-203ENST00000403076 NUDT1P36639 197 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 SLCO1A2P46721 670 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 INPP5AQ14642 412 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 LRIG3Q6UXM1 1119 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 PELI3Q8N2H9 469 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 DENND6BQ8NEG7 585 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 CADM4Q8NFZ8 388 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 BTN2A2Q8WVV5 523 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 GLYATL1Q969I3 302 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 CENPTQ96BT3 561 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 LENG8Q96PV6 779 aaPredicted RBP17.93■□□□□ 0.46
SDC1-203ENST00000403076 SLC24A2Q9UI40 661 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 DMTF1Q9Y222 760 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 VPS9D1Q9Y2B5 631 aa17.93■□□□□ 0.46
SDC1-203ENST00000403076 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.93■□□□□ 0.46
SDC1-203ENST00000403076 METTL12A8MUP2 240 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 HAUS5O94927 633 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 S1PR4O95977 384 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 ACRV1P26436 265 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 CA5AP35218 305 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 GP5P40197 560 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 CD151P48509 253 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 DBN1Q16643 649 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 KRT71Q3SY84 523 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 CEP85LQ5SZL2 805 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 GPRC6AQ5T6X5 926 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 RNF187Q5TA31 235 aaPredicted RBP17.92■□□□□ 0.46
SDC1-203ENST00000403076 GRTP1Q5TC63 336 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 ADAMTSL4Q6UY14 1074 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 PACS1Q6VY07 963 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 PHYKPLQ8IUZ5 450 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 EPS8L3Q8TE67 593 aaKnown RBP17.92■□□□□ 0.46
SDC1-203ENST00000403076 SLC44A1Q8WWI5 657 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 SCG3Q8WXD2 468 aaKnown RBP17.92■□□□□ 0.46
SDC1-203ENST00000403076 FOXJ1Q92949 421 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 DCUN1D1Q96GG9 259 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms