RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 INTS10Q9NVR2 710 aaKnown RBP13.31□□□□□ -0.28
CCDC3-202ENST00000378839 OAS3Q9Y6K5 1087 aaKnown RBP13.31□□□□□ -0.28
CCDC3-202ENST00000378839 PLXNA4Q9HCM2 1894 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 ANKRD66B4E2M5 251 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 NRG2O14511 850 aaPredicted RBP13.3□□□□□ -0.28
CCDC3-202ENST00000378839 PQBP1O60828 265 aaKnown RBP13.3□□□□□ -0.28
CCDC3-202ENST00000378839 CLDN11O75508 207 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 SRP72O76094 671 aaKnown RBP13.3□□□□□ -0.28
CCDC3-202ENST00000378839 CAPN3P20807 821 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 C11orf91Q3C1V1 193 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 ADGRF1Q5T601 910 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 DEFB128Q7Z7B8 93 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 TTC30BQ8N4P2 665 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 EFHBQ8N7U6 833 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 EEF1AKMT1Q8WVE0 214 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 ASB9Q96DX5 294 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 DERL2Q9GZP9 239 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 TMEM181Q9P2C4 612 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 LHX3Q9UBR4 397 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 ANAPC1Q9H1A4 1944 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 MRASO14807 208 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 AZIN1O14977 448 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 NRP2O60462 931 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 KERAO60938 352 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 GPC4O75487 556 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 TMCC1O94876 653 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 CRTAMO95727 393 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 CLCQ05315 142 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 TRIM25Q14258 630 aaKnown RBP13.3□□□□□ -0.28
CCDC3-202ENST00000378839 GRM2Q14416 872 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 C18orf21Q32NC0 220 aaPredicted RBP13.3□□□□□ -0.28
CCDC3-202ENST00000378839 MMEL1Q495T6 779 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 VPS26BQ4G0F5 336 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 ATXN7L2Q5T6C5 722 aaPredicted RBP13.3□□□□□ -0.28
CCDC3-202ENST00000378839 CYP2R1Q6VVX0 501 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 SPATA24Q86W54 205 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 DCBLD1Q8N8Z6 715 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 BHMTQ93088 406 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 PLEKHG4BQ96PX9 1271 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 VCXQ9H320 206 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 POLG2Q9UHN1 485 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.3□□□□□ -0.28
CCDC3-202ENST00000378839 SUPT3HB4E1H0 165 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 SUPT3HO75486 399 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 ABLIM3O94929 683 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 GFAPP14136 432 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 MC4RP32245 332 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 ZFP36L2P47974 494 aaKnown RBP13.3□□□□□ -0.28
CCDC3-202ENST00000378839 DIO3P55073 304 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 ELAVL2Q12926 359 aaKnown RBP13.3□□□□□ -0.28
CCDC3-202ENST00000378839 ZNF177Q13360 481 aaPredicted RBP13.3□□□□□ -0.28
CCDC3-202ENST00000378839 PDK3Q15120 406 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 ACBD5Q5T8D3 534 aaPredicted RBP13.3□□□□□ -0.28
CCDC3-202ENST00000378839 KLHDC10Q6PID8 442 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 AFTPHQ6ULP2 937 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 SCIMPQ6UWF3 145 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 SYVN1Q86TM6 617 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 AUTS2Q8WXX7 1259 aa13.3□□□□□ -0.28
CCDC3-202ENST00000378839 FCF1Q9Y324 198 aaKnown RBP13.3□□□□□ -0.28
CCDC3-202ENST00000378839 MYOCOSA0A1B0GUC4 107 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 LCHNA4D1U4 455 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 XIAPP98170 497 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 OR2T11Q8NH01 316 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 CD200R1Q8TD46 325 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 IGSF21Q96ID5 467 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 MUC3BQ9H195 1237 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 SEMA6AQ9H2E6 1030 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 IL1RL2Q9HB29 575 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 RNF112Q9ULX5 631 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 OR51B4Q9Y5P0 310 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 A0A0J9YYE9 177 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 C1RP00736 705 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 C8BP07358 591 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 RPS17P08708 135 aaKnown RBP13.29□□□□□ -0.28
CCDC3-202ENST00000378839 STX5Q13190 355 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 MED21Q13503 144 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 BFSP2Q13515 415 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 USP41Q3LFD5 358 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 NCEH1Q6PIU2 408 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 OR6K2Q8NGY2 324 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 NUDT8Q8WV74 236 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 PLD4Q96BZ4 506 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 ACOX2Q99424 681 aa13.29□□□□□ -0.28
CCDC3-202ENST00000378839 GPATCH1Q9BRR8 931 aaKnown RBP13.29□□□□□ -0.28
CCDC3-202ENST00000378839 SUCOQ9UBS9 1254 aaKnown RBP13.29□□□□□ -0.28
CCDC3-202ENST00000378839 TSR3Q9UJK0 312 aaKnown RBP13.29□□□□□ -0.28
CCDC3-202ENST00000378839 A0A1B0GVM2 712 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ASPDHA6ND91 283 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 FXYD1O00168 92 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 TXNDC9O14530 226 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 NDUFS3O75489 264 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 CSPG5O95196 566 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ALPIP09923 528 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 SLC7A2P52569 658 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 HMBOX1Q6NT76 420 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 DDIASQ8IXT1 998 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 LRRC43Q8N309 656 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 LRTOMTQ8WZ04 291 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 MYRFLQ96LU7 910 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ZNF334Q9HCZ1 680 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms