RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 ASMTLO95671 621 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 PRLP01236 227 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 PRKAR1AP10644 381 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 SKILP12757 684 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 MAP4P27816 1152 aaKnown RBP13.67□□□□□ -0.22
CXCL12-202ENST00000374426 PPM1FP49593 454 aaPredicted RBP13.67□□□□□ -0.22
CXCL12-202ENST00000374426 EPHB1P54762 984 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 DSC2Q02487 901 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 ITKQ08881 620 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 MMRN1Q13201 1228 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 NFATC2Q13469 925 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 PIGHQ14442 188 aaPredicted RBP13.67□□□□□ -0.22
CXCL12-202ENST00000374426 IYDQ6PHW0 289 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 CHST15Q7LFX5 561 aaPredicted RBP13.67□□□□□ -0.22
CXCL12-202ENST00000374426 LRRC49Q8IUZ0 686 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.67□□□□□ -0.22
CXCL12-202ENST00000374426 NIPA2Q8N8Q9 360 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 NCSTNQ92542 709 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 BTBD6Q96KE9 485 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 WDR24Q96S15 920 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 TDRD1Q9BXT4 1180 aaKnown RBP13.67□□□□□ -0.22
CXCL12-202ENST00000374426 APMAPQ9HDC9 416 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 FBXO8Q9NRD0 319 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 VPS18Q9P253 973 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 CHKBQ9Y259 395 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 NOTCH2Q04721 2471 aa13.67□□□□□ -0.22
CXCL12-202ENST00000374426 SPTBN1Q01082 2364 aaKnown RBP13.66□□□□□ -0.22
CXCL12-202ENST00000374426 CD48P09326 243 aa13.66□□□□□ -0.22
CXCL12-202ENST00000374426 CASRP41180 1078 aa13.66□□□□□ -0.22
CXCL12-202ENST00000374426 GARSP41250 739 aaKnown RBP13.66□□□□□ -0.22
CXCL12-202ENST00000374426 GALNT2Q10471 571 aa13.66□□□□□ -0.22
CXCL12-202ENST00000374426 CDC20Q12834 499 aa13.66□□□□□ -0.22
CXCL12-202ENST00000374426 CEACAM20Q6UY09 585 aa13.66□□□□□ -0.22
CXCL12-202ENST00000374426 ARRDC2Q8TBH0 407 aa13.66□□□□□ -0.22
CXCL12-202ENST00000374426 FAM71BQ8TC56 605 aa13.66□□□□□ -0.22
CXCL12-202ENST00000374426 MAML1Q92585 1016 aa13.66□□□□□ -0.22
CXCL12-202ENST00000374426 KIAA1143Q96AT1 154 aaPredicted RBP13.66□□□□□ -0.22
CXCL12-202ENST00000374426 LYSMD1Q96S90 227 aa13.66□□□□□ -0.22
CXCL12-202ENST00000374426 ZPBPQ9BS86 351 aa13.66□□□□□ -0.22
CXCL12-202ENST00000374426 ZNF71Q9NQZ8 489 aaPredicted RBP13.66□□□□□ -0.22
CXCL12-202ENST00000374426 RCOR3Q9P2K3 495 aaPredicted RBP13.66□□□□□ -0.22
CXCL12-202ENST00000374426 DNPEPQ9ULA0 475 aa13.66□□□□□ -0.22
CXCL12-202ENST00000374426 KCNK6Q9Y257 313 aa13.66□□□□□ -0.22
CXCL12-202ENST00000374426 TMEM184BQ9Y519 407 aaPredicted RBP13.66□□□□□ -0.22
CXCL12-202ENST00000374426 NBPF19A0A087WUL8 3843 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 FADS2P1A8MWK0 482 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 MATN3O15232 486 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 STK17BO94768 372 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 ACP5P13686 325 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 OAS2P29728 719 aaKnown RBP13.65□□□□□ -0.22
CXCL12-202ENST00000374426 EPHA4P54764 986 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 FOXK1P85037 733 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 TYRO3Q06418 890 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 NIPAL4Q0D2K0 466 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 ABHD18Q0P651 414 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 KRT81Q14533 505 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 IGFBP7Q16270 282 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 HENMT1Q5T8I9 393 aaKnown RBP13.65□□□□□ -0.22
CXCL12-202ENST00000374426 NCBP2-AS2Q69YL0 99 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 RAVER1Q8IY67 606 aaKnown RBP13.65□□□□□ -0.22
CXCL12-202ENST00000374426 C9orf43Q8TAL5 461 aaPredicted RBP13.65□□□□□ -0.22
CXCL12-202ENST00000374426 STARD8Q92502 1023 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 SH3KBP1Q96B97 665 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 HERPUD2Q9BSE4 406 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 THAP2Q9H0W7 228 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 RBM22Q9NW64 420 aaKnown RBP eCLIP13.65□□□□□ -0.22
CXCL12-202ENST00000374426 ANKMY1Q9P2S6 941 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 KLHL3Q9UH77 587 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 ANAPC7Q9UJX3 599 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 ANAPC2Q9UJX6 822 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 TTLL3Q9Y4R7 772 aa13.65□□□□□ -0.22
CXCL12-202ENST00000374426 PRRC2CQ9Y520 2896 aaKnown RBP13.64□□□□□ -0.23
CXCL12-202ENST00000374426 KIR2DS5A0A0G2JLQ3 304 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 A0A0G2JNG1 304 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 KIR2DS3K7RE56 304 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 SNX2O60749 519 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 DLGAP3O95886 979 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 F3P13726 295 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 CES1P23141 567 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 MAN1A1P33908 653 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 MAPK9P45984 424 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 SPINT3P49223 89 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 ZNF165P49910 485 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 ARSEP51690 589 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 RPL26P61254 145 aaKnown RBP13.64□□□□□ -0.23
CXCL12-202ENST00000374426 DPYSL3Q14195 570 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 KIR2DS5Q14953 304 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 PAFAH1B3Q15102 231 aaKnown RBP13.64□□□□□ -0.23
CXCL12-202ENST00000374426 CCDC122Q5T0U0 273 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 ATP1A1-AS1Q5TC04 95 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 HGSNATQ68CP4 663 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 LYSMD3Q7Z3D4 306 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 SLC9B2Q86UD5 537 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 LPCAT1Q8NF37 534 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 LRRN4Q8WUT4 740 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 APOBEC4Q8WW27 367 aaKnown RBP13.64□□□□□ -0.23
CXCL12-202ENST00000374426 FATE1Q969F0 183 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 ABHD17AQ96GS6 310 aa13.64□□□□□ -0.23
CXCL12-202ENST00000374426 NAP1L5Q96NT1 182 aaPredicted RBP13.64□□□□□ -0.23
CXCL12-202ENST00000374426 TSGA13Q96PP4 275 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms