RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 GPR158Q5T848 1215 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 DDI2Q5TDH0 399 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 FAM180AQ6UWF9 173 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 ZYG11AQ6WRX3 759 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 UBE2R2Q712K3 238 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-203ENST00000372407 SPPL2CQ8IUH8 684 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 FAM81AQ8TBF8 368 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 DLG5Q8TDM6 1919 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 ASZ1Q8WWH4 475 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 AP3S1Q92572 193 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 SLC47A1Q96FL8 570 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 GORASP1Q9BQQ3 440 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 LRTM1Q9HBL6 345 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 FETUBQ9UGM5 382 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 KCNU1A8MYU2 1149 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 MSI1O43347 362 aaKnown RBP11.39□□□□□ -0.59
PTPRF-203ENST00000372407 PRDX6P30041 224 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 POLR2JP52435 117 aaKnown RBP11.39□□□□□ -0.59
PTPRF-203ENST00000372407 VWA5B1Q5TIE3 1220 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 RNF220Q5VTB9 566 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 NEK5Q6P3R8 708 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 RHBDF2Q6PJF5 856 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 THAP5Q7Z6K1 395 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 STYXQ8WUJ0 223 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 HEXDCQ8WVB3 486 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 C7orf43Q8WVR3 580 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 NTPCRQ9BSD7 190 aaKnown RBP11.39□□□□□ -0.59
PTPRF-203ENST00000372407 ZFYVE1Q9HBF4 777 aa11.39□□□□□ -0.59
PTPRF-203ENST00000372407 C2CD4BA6NLJ0 364 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 HIST1H2ABP04908 130 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 GPIP06744 558 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 CHRNB2P17787 502 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 APLP1P51693 650 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 CPTPQ5TA50 214 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 FSTL4Q6MZW2 842 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 ERICH5Q6P6B1 374 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 GALNT18Q6P9A2 607 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 HIST3H2AQ7L7L0 130 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 ZNF567Q8N184 647 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 RTL3Q8N8U3 475 aaKnown RBP11.38□□□□□ -0.59
PTPRF-203ENST00000372407 EEF1AKMT1Q8WVE0 214 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 TWIST2Q8WVJ9 160 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 TFAP2BQ92481 460 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 HIST1H2ACQ93077 130 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 CORO1BQ9BR76 489 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 SLC25A51Q9H1U9 297 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 ABCG8Q9H221 673 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 KCTD5Q9NXV2 234 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 TIMM22Q9Y584 194 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 URADA6NGE7 173 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 TRMUO75648 421 aaKnown RBP11.38□□□□□ -0.59
PTPRF-203ENST00000372407 ZBTB11O95625 1053 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-203ENST00000372407 SLC35G4P0C7Q5 338 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 OR1D2P34982 312 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 RHAGQ02094 409 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 LCP2Q13094 533 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 DGKZQ13574 1117 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 NPY5RQ15761 445 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 FAM110CQ1W6H9 321 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 CADM1Q9BY67 442 aaKnown RBP11.38□□□□□ -0.59
PTPRF-203ENST00000372407 SMPD3Q9NY59 655 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-203ENST00000372407 MRPS23Q9Y3D9 190 aaKnown RBP11.38□□□□□ -0.59
PTPRF-203ENST00000372407 NR2E3Q9Y5X4 410 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 CCDC189A1A4V9 331 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 IL1BP01584 269 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 ALOX5P09917 674 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 CTSEP14091 401 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 CTSKP43235 329 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 VPS26BQ4G0F5 336 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 RFTN2Q52LD8 501 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-203ENST00000372407 SLC9A7Q96T83 725 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 S100A13Q99584 98 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 MFHAS1Q9Y4C4 1052 aa11.38□□□□□ -0.59
PTPRF-203ENST00000372407 H0Y858 1186 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 CYP4B1P13584 511 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 SP100P23497 879 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 MAPKAPK2P49137 400 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 ASTE1Q2TB18 679 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 IL23RQ5VWK5 629 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 PTCHD4Q6ZW05 846 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 CFAP52Q8N1V2 620 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 TCAIMQ8N3R3 496 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 BANPQ8N9N5 519 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 IRGQQ8WZA9 623 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 CXorf40BQ96DE9 158 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 MYO19Q96H55 970 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 FAXDC2Q96IV6 333 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 MAF1Q9H063 256 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 TCAF1Q9Y4C2 921 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 N6AMT1Q9Y5N5 214 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 ELOVL7A1L3X0 281 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 UGT2B11O75310 529 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 TRBC1P01850 177 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 HLA-DQA2P01906 255 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 LIPEQ05469 1076 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 SIM2Q14190 667 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 ACAP2Q15057 778 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 TCEA2Q15560 299 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 POM121L1PQ3SYA9 428 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 ATG14Q6ZNE5 492 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms