RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 CRYL1Q9Y2S2 319 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 PLRG1O43660 514 aaKnown RBP19.77■□□□□ 0.76
CLN3-205ENST00000359984 LZTS3O60299 673 aaPredicted RBP19.77■□□□□ 0.76
CLN3-205ENST00000359984 NDUFS3O75489 264 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 ALDOAP04075 364 aaKnown RBP19.77■□□□□ 0.76
CLN3-205ENST00000359984 DNAJC3Q13217 504 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 DBN1Q16643 649 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 CERS6Q6ZMG9 384 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 KBTBD6Q86V97 674 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 DTX3LQ8TDB6 740 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 LPGAT1Q92604 370 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 SPATA16Q9BXB7 569 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 OSBPL6Q9BZF3 934 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 CD93Q9NPY3 652 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 CRLS1Q9UJA2 301 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 FZD4Q9ULV1 537 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 NCKAP1Q9Y2A7 1128 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 ACTL7BQ9Y614 415 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 IGLON5A6NGN9 336 aa19.76■□□□□ 0.75
CLN3-205ENST00000359984 CLCN5P51795 746 aa19.76■□□□□ 0.75
CLN3-205ENST00000359984 ADPRHP54922 357 aa19.76■□□□□ 0.75
CLN3-205ENST00000359984 RBM20Q5T481 1227 aaKnown RBP19.76■□□□□ 0.75
CLN3-205ENST00000359984 SH2D5Q6ZV89 423 aa19.76■□□□□ 0.75
CLN3-205ENST00000359984 CNPY4Q8N129 248 aa19.76■□□□□ 0.75
CLN3-205ENST00000359984 AP2M1Q96CW1 435 aa19.76■□□□□ 0.75
CLN3-205ENST00000359984 SENP1Q9P0U3 644 aa19.76■□□□□ 0.75
CLN3-205ENST00000359984 TMPRSS11EQ9UL52 423 aa19.76■□□□□ 0.75
CLN3-205ENST00000359984 SLC39A10Q9ULF5 831 aa19.76■□□□□ 0.75
CLN3-205ENST00000359984 FAM95CA0A1B0GW59 222 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 GOLGA8RI6L899 631 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 OR1I1O60431 355 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 KRT4P19013 534 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 HPDP32754 393 aaPredicted RBP19.75■□□□□ 0.75
CLN3-205ENST00000359984 TPMTP51580 245 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 SFSWAPQ12872 951 aaKnown RBP19.75■□□□□ 0.75
CLN3-205ENST00000359984 ITGA9Q13797 1035 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 RNF187Q5TA31 235 aaPredicted RBP19.75■□□□□ 0.75
CLN3-205ENST00000359984 ZNF549Q6P9A3 640 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 FAM124AQ86V42 546 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 C4orf33Q8N1A6 199 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 NXPE1Q8N323 547 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 TRAM1L1Q8N609 369 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 GPATCH11Q8N954 259 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 NUS1Q96E22 293 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 NDNQ99608 321 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 CHRDQ9H2X0 955 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 CAB39LQ9H9S4 337 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 EBF1Q9UH73 591 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 ZFR2Q9UPR6 939 aaKnown RBP19.75■□□□□ 0.75
CLN3-205ENST00000359984 VPS9D1Q9Y2B5 631 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 TPP1O14773 563 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 PFDN6O15212 129 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 PYGBP11216 843 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 ACRV1P26436 265 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 ZNF284Q2VY69 593 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 LYPLAL1Q5VWZ2 237 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 SEL1L3Q68CR1 1132 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 ZNF765Q7L2R6 523 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 SLC41A1Q8IVJ1 513 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 PGBD3Q8N328 593 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 ISL2Q96A47 359 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 CCDC97Q96F63 343 aaPredicted RBP19.75■□□□□ 0.75
CLN3-205ENST00000359984 ELMO2Q96JJ3 720 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 HHIPQ96QV1 700 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 ZSCAN5AQ9BUG6 496 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 ITM2CQ9NQX7 267 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 SIT1Q9Y3P8 196 aa19.75■□□□□ 0.75
CLN3-205ENST00000359984 LRRK1Q38SD2 2015 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 UBA6A0AVT1 1052 aaPredicted RBP19.74■□□□□ 0.75
CLN3-205ENST00000359984 FADS2P1A8MWK0 482 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 TM7SF2O76062 418 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 BRAFP15056 766 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 SAT1P21673 171 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 PTGER3P43115 390 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 POLD2P49005 469 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 USP10Q14694 798 aaKnown RBP19.74■□□□□ 0.75
CLN3-205ENST00000359984 ANO7Q6IWH7 933 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 CMC1Q7Z7K0 106 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 PELI3Q8N2H9 469 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 TSTD1Q8NFU3 115 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 SMC6Q96SB8 1091 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 TTC1Q99614 292 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 SNX15Q9NRS6 342 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 CORO1CQ9ULV4 474 aaPredicted RBP19.74■□□□□ 0.75
CLN3-205ENST00000359984 PLXNA2O75051 1894 aa19.74■□□□□ 0.75
CLN3-205ENST00000359984 PRR23AA6NEV1 266 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 NR1D1P20393 614 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 FMO4P31512 558 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 PPARGP37231 505 aaPredicted RBP19.73■□□□□ 0.75
CLN3-205ENST00000359984 MAGEA12P43365 314 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 RPS9P46781 194 aaKnown RBP19.73■□□□□ 0.75
CLN3-205ENST00000359984 SERPINB8P50452 374 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 PGGT1BP53609 377 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 SLC18A2Q05940 514 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 ILF2Q12905 390 aaKnown RBP19.73■□□□□ 0.75
CLN3-205ENST00000359984 HECTD2Q5U5R9 776 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 SPEM1Q8N4L4 309 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 ULK4Q96C45 1275 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 BIRC8Q96P09 236 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 BOCQ9BWV1 1114 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms