RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PLK2Q9NYY3 685 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 RCOR3Q9P2K3 495 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 WNT10BO00744 389 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 PPIBP23284 216 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 ZBTB8BQ8NAP8 495 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 CANT1Q8WVQ1 401 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 PDCD10Q9BUL8 212 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 H0Y858 1186 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 XKR6Q5GH73 641 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 LDB1Q86U70 411 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 ATL1Q8WXF7 558 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 C11orf24Q96F05 449 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 QRFPRQ96P65 431 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 TM6SF2Q9BZW4 377 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 PDLIM1O00151 329 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 SERPINA4P29622 427 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 DEF8Q6ZN54 512 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 HBEGFQ99075 208 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 FNDC11Q9BVV2 318 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 STK25O00506 426 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 C9P02748 559 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 LINGO3P0C6S8 592 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 COL6A1P12109 1028 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 YAP1P46937 504 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 ELAVL2Q12926 359 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 SFT2D3Q587I9 215 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 XKR5Q6UX68 686 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 BSNDQ8WZ55 320 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 APOLD1Q96LR9 279 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 AGAP2Q99490 1192 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 COPS4Q9BT78 406 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 GLIS2Q9BZE0 524 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 STOML2Q9UJZ1 356 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 KIR3DL1P43629 444 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 CRY2Q49AN0 593 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 DET1Q7L5Y6 550 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 MEIOBQ8N635 442 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 DCAKDQ8WVC6 231 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 GFM1Q96RP9 751 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 KCTD15Q96SI1 283 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 P2RX7Q99572 595 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 PCDHGA10Q9Y5H3 936 aa19.44■□□□□ 0.7
CCDC88B-202ENST00000356786 FAM92AA1XBS5 289 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 ITM2AO43736 263 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 UNGP13051 313 aaPredicted RBP19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 TAPT1Q6NXT6 567 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 RASSF6Q6ZTQ3 369 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 ZZZ3Q8IYH5 903 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 ZNF567Q8N184 647 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 UBE2J2Q8N2K1 259 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 SLC35B2Q8TB61 432 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 ZNF232Q9UNY5 417 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 CNTN6Q9UQ52 1028 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 CACNA1FO60840 1977 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 NPEPPSL1A6NEC2 478 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 GUCY1B2O75343 617 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 SNX4O95219 450 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 BMP7P18075 431 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 LCP2Q13094 533 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 MTAPQ13126 283 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 SKIV2LQ15477 1246 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 COPS5Q92905 334 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 AKT1S1Q96B36 256 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 AASDHPPTQ9NRN7 309 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 SLC15A5A6NIM6 579 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 ZNF99A8MXY4 864 aaPredicted RBP19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 STX16-NPEPL1H3BU86 382 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 CILPO75339 1184 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 PTPN3P26045 913 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 NTSP30990 170 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 FKBP1AP62942 108 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 FAM35AQ86V20 835 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 TRAPPC5Q8IUR0 188 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 ENDOVQ8N8Q3 282 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 NAT8LQ8N9F0 302 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 MOSPD2Q8NHP6 518 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 TEFMQ96QE5 360 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 NXF3Q9H4D5 531 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 LRTM1Q9HBL6 345 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 OAZ3Q9UMX2 235 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 ZNF536O15090 1300 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 DISP2A7MBM2 1401 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 MDM4O15151 490 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 CLCQ05315 142 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 HKDC1Q2TB90 917 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 PDSS2Q86YH6 399 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 TFAP2BQ92481 460 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 SPATA5L1Q9BVQ7 753 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 DUSP16Q9BY84 665 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 VPS51Q9UID3 782 aa19.43■□□□□ 0.7
CCDC88B-202ENST00000356786 ARHGEF33A8MVX0 844 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 PRKD3O94806 890 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 TAS2R39P59534 338 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 MXD1Q05195 221 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 TRPV1Q8NER1 839 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 OR10A6Q8NH74 314 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 TEX47Q8TBZ9 253 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 ASB9Q96DX5 294 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 ARHGEF4Q9NR80 690 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 B4GALT4O60513 344 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms