RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 BRD8Q9H0E9 1235 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 NKX2-4Q9H2Z4 354 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 RBM22Q9NW64 420 aaKnown RBP eCLIP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 UXTQ9UBK9 157 aaPredicted RBP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 STOML2Q9UJZ1 356 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 CNOT11Q9UKZ1 510 aaKnown RBP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 MAFFQ9ULX9 164 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 CEPT1Q9Y6K0 416 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 ARHGAP10A1A4S6 786 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 NEMP2A6NFY4 417 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 PRAMEF12O95522 483 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 RHOP08100 348 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 NELFEP18615 380 aaKnown RBP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 ETFBP38117 255 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 KPNA1P52294 538 aaPredicted RBP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 PSME3P61289 254 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 HPCAP84074 193 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 POLD3Q15054 466 aaPredicted RBP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 DENND5AQ6IQ26 1287 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 CNSTQ6PJW8 725 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 CCDC149Q6ZUS6 474 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 GRASPQ7Z6J2 395 aaPredicted RBP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 TXNDC5Q8NBS9 432 aaKnown RBP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 CEP70Q8NHQ1 597 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 DDI1Q8WTU0 396 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 PABPC5Q96DU9 382 aaKnown RBP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 ZNF597Q96LX8 424 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 LRRC3BQ96PB8 259 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 CDK5RAP1Q96SZ6 601 aaKnown RBP8.58□□□□□ -1.04
TRIM55-204ENST00000353317 PDFQ9HBH1 243 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 TNFRSF12AQ9NP84 129 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 NCKIPSDQ9NZQ3 722 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 LMCD1Q9NZU5 365 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 EPS15L1Q9UBC2 864 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 TRHDEQ9UKU6 1024 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 FIS1Q9Y3D6 152 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 AP4S1Q9Y587 144 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 DOCK8Q8NF50 2099 aa8.58□□□□□ -1.04
TRIM55-204ENST00000353317 PRORSD1PA6NEY8 169 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 FBP2O00757 339 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 TRMUO75648 421 aaKnown RBP8.57□□□□□ -1.04
TRIM55-204ENST00000353317 CKMP06732 381 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 C8BP07358 591 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 COL6A2P12110 1019 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 STMN1P16949 149 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 ARNTP27540 789 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 MZF1P28698 734 aaPredicted RBP8.57□□□□□ -1.04
TRIM55-204ENST00000353317 CHRNA4P43681 627 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 RGRP47804 291 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 PPP3CCP48454 512 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 PSMD8P48556 350 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 SLC11A2P49281 568 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 EPHA5P54756 1037 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 RAB10P61026 200 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 RHDQ02161 417 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 RALGDSQ12967 914 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 POU6F1Q14863 301 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 MYBPC3Q14896 1274 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 FAM219BQ5XKK7 198 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 ITPRIPL1Q6GPH6 555 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 NAPEPLDQ6IQ20 393 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 KLHDC8BQ8IXV7 354 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 GAB3Q8WWW8 586 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 ING5Q8WYH8 240 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 SLCO4A1Q96BD0 722 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 TMIGD2Q96BF3 282 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 SLC29A1Q99808 456 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 GDF15Q99988 308 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 GLOD4Q9HC38 313 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 NSMCE4AQ9NXX6 385 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 CACNA2D2Q9NY47 1150 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 UTP6Q9NYH9 597 aaKnown RBP8.57□□□□□ -1.04
TRIM55-204ENST00000353317 CFAP97Q9P2B7 532 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 SUCOQ9UBS9 1254 aaKnown RBP8.57□□□□□ -1.04
TRIM55-204ENST00000353317 PADI4Q9UM07 663 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 hCG_2014768A0A024R1R8 64 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 FAM95CA0A1B0GW59 222 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 TRPC5OSA6NMA1 111 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 LEFTY2O00292 366 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 MTSS1O43312 755 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 RAMP2O60895 175 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 RB1P06400 928 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 EMP3P54852 163 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 SLC7A9P82251 487 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 TXNL4AP83876 142 aaKnown RBP8.57□□□□□ -1.04
TRIM55-204ENST00000353317 DSC2Q02487 901 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 GNA12Q03113 381 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 UBE3AQ05086 875 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 SULT2A1Q06520 285 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 PDAP1Q13442 181 aaKnown RBP8.57□□□□□ -1.04
TRIM55-204ENST00000353317 LRP8Q14114 963 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 PPP1R3AQ16821 1122 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 MTX3Q5HYI7 312 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 PRSS36Q5K4E3 855 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 ESRP1Q6NXG1 681 aaKnown RBP8.57□□□□□ -1.04
TRIM55-204ENST00000353317 TRIM67Q6ZTA4 783 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 RPS27LQ71UM5 84 aaKnown RBP8.57□□□□□ -1.04
TRIM55-204ENST00000353317 CNTN4Q8IWV2 1026 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 ALDH16A1Q8IZ83 802 aa8.57□□□□□ -1.04
TRIM55-204ENST00000353317 MYO1HQ8N1T3 1032 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms