RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ADARB1P78563 741 aaKnown RBP22.28■■□□□ 1.16
TRIM28-202ENST00000341753 PTPRCAPQ14761 206 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 HABP4Q5JVS0 413 aaKnown RBP22.28■■□□□ 1.16
TRIM28-202ENST00000341753 OR13J1Q8NGT2 312 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 L3HYPDHQ96EM0 354 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 TSPAN17Q96FV3 270 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 TRMOQ9BU70 441 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 CHID1Q9BWS9 393 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 CNGB3Q9NQW8 809 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 POLR3BQ9NW08 1133 aaPredicted RBP22.28■■□□□ 1.16
TRIM28-202ENST00000341753 NUDT5Q9UKK9 219 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 NEU3Q9UQ49 428 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 OAS3Q9Y6K5 1087 aaKnown RBP22.28■■□□□ 1.16
TRIM28-202ENST00000341753 HTTP42858 3142 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 CLASP2O75122 1294 aaKnown RBP22.28■■□□□ 1.16
TRIM28-202ENST00000341753 ZNF773Q6PK81 442 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 USP51Q70EK9 711 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 PIWIL3Q7Z3Z3 882 aaKnown RBP22.28■■□□□ 1.16
TRIM28-202ENST00000341753 CILP2Q8IUL8 1156 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 KLHDC8BQ8IXV7 354 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 TBRG4Q969Z0 631 aaKnown RBP eCLIP22.28■■□□□ 1.16
TRIM28-202ENST00000341753 BIRC7Q96CA5 298 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 PABPC5Q96DU9 382 aaKnown RBP22.28■■□□□ 1.16
TRIM28-202ENST00000341753 PAAF1Q9BRP4 392 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 INTS7Q9NVH2 962 aaKnown RBP22.28■■□□□ 1.16
TRIM28-202ENST00000341753 SLC45A1Q9Y2W3 748 aa22.28■■□□□ 1.16
TRIM28-202ENST00000341753 MATN3O15232 486 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 MSI1O43347 362 aaKnown RBP22.27■■□□□ 1.16
TRIM28-202ENST00000341753 OXCT1P55809 520 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 OR4D1Q15615 310 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 RALGAPA2Q2PPJ7 1873 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 PAN2Q504Q3 1202 aaKnown RBP22.27■■□□□ 1.16
TRIM28-202ENST00000341753 RALGPS2Q86X27 583 aaPredicted RBP22.27■■□□□ 1.16
TRIM28-202ENST00000341753 TOP6BLQ8N6T0 577 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 TERB1Q8NA31 727 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 C1orf50Q9BV19 199 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 SEMA4BQ9NPR2 832 aaPredicted RBP22.27■■□□□ 1.16
TRIM28-202ENST00000341753 RGS18Q9NS28 235 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 ERGIC3Q9Y282 383 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 SLC27A5Q9Y2P5 690 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 MOCS2O96007 188 aaPredicted RBP22.27■■□□□ 1.16
TRIM28-202ENST00000341753 KCNE1P15382 129 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 TCF3P15923 654 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 LBPP18428 481 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 KPNA1P52294 538 aaPredicted RBP22.27■■□□□ 1.16
TRIM28-202ENST00000341753 IMPG1Q17R60 797 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 PLA2G4EQ3MJ16 856 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 BLOC1S3Q6QNY0 202 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 KIAA0408Q6ZU52 694 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 KIAA2013Q8IYS2 634 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 DCP1BQ8IZD4 617 aaKnown RBP22.27■■□□□ 1.16
TRIM28-202ENST00000341753 PGAP3Q96FM1 320 aaPredicted RBP22.27■■□□□ 1.16
TRIM28-202ENST00000341753 SDR39U1Q9NRG7 319 aaPredicted RBP22.27■■□□□ 1.16
TRIM28-202ENST00000341753 INTS10Q9NVR2 710 aaKnown RBP22.27■■□□□ 1.16
TRIM28-202ENST00000341753 WARS2Q9UGM6 360 aaKnown RBP22.27■■□□□ 1.16
TRIM28-202ENST00000341753 GNPTGQ9UJJ9 305 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 TRIM17Q9Y577 477 aa22.27■■□□□ 1.16
TRIM28-202ENST00000341753 TRIM64BA6NI03 449 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 SOBPA7XYQ1 873 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 CPNE6O95741 557 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 F9P00740 461 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 MBL2P11226 248 aaPredicted RBP22.26■■□□□ 1.15
TRIM28-202ENST00000341753 FCGR1AP12314 374 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 PERM1Q5SV97 790 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 XAF1Q6GPH4 301 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 TMCO5AQ8N6Q1 288 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 PTCD2Q8WV60 388 aaKnown RBP22.26■■□□□ 1.15
TRIM28-202ENST00000341753 SLC35B4Q969S0 331 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 GAD1Q99259 594 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 DGCR6LQ9BY27 220 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 MRM3Q9HC36 420 aaKnown RBP22.26■■□□□ 1.15
TRIM28-202ENST00000341753 SLC52A3Q9NQ40 469 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 MIOSQ9NXC5 875 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 IQCA1LA6NCM1 817 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 EIF2B2P49770 351 aaKnown RBP22.26■■□□□ 1.15
TRIM28-202ENST00000341753 UFM1P61960 85 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 PLIN5Q00G26 463 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 MAP2K5Q13163 448 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 TIGD2Q4W5G0 525 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 C1QTNF12Q5T7M4 302 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 NIPAL1Q6NVV3 410 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 NUDT8Q8WV74 236 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 WDR37Q9Y2I8 494 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 ST14Q9Y5Y6 855 aa22.26■■□□□ 1.15
TRIM28-202ENST00000341753 TTC36A6NLP5 189 aa22.25■■□□□ 1.15
TRIM28-202ENST00000341753 CLPXO76031 633 aa22.25■■□□□ 1.15
TRIM28-202ENST00000341753 HRH2P25021 359 aa22.25■■□□□ 1.15
TRIM28-202ENST00000341753 IDUAP35475 653 aa22.25■■□□□ 1.15
TRIM28-202ENST00000341753 OPRL1P41146 370 aa22.25■■□□□ 1.15
TRIM28-202ENST00000341753 OR4D2P58180 307 aa22.25■■□□□ 1.15
TRIM28-202ENST00000341753 GRSF1Q12849 480 aaKnown RBP eCLIP22.25■■□□□ 1.15
TRIM28-202ENST00000341753 BTG3Q14201 252 aaPredicted RBP22.25■■□□□ 1.15
TRIM28-202ENST00000341753 SPCS2Q15005 226 aa22.25■■□□□ 1.15
TRIM28-202ENST00000341753 ZNF513Q8N8E2 541 aaPredicted RBP22.25■■□□□ 1.15
TRIM28-202ENST00000341753 C3orf58Q8NDZ4 430 aa22.25■■□□□ 1.15
TRIM28-202ENST00000341753 TRUB1Q8WWH5 349 aaKnown RBP22.25■■□□□ 1.15
TRIM28-202ENST00000341753 KLHL5Q96PQ7 755 aa22.25■■□□□ 1.15
TRIM28-202ENST00000341753 BEGAINQ9BUH8 593 aa22.25■■□□□ 1.15
TRIM28-202ENST00000341753 RIC8BQ9NVN3 520 aa22.25■■□□□ 1.15
TRIM28-202ENST00000341753 C17orf102A2RUQ5 167 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms