RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 KIAA0907Q7Z7F0 614 aaPredicted RBP8.37□□□□□ -1.07
HMGB1-203ENST00000341423 DPH5Q9H2P9 285 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 GHRLQ9UBU3 117 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 STX2P32856 288 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 CXCR3P49682 368 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 DLG4P78352 724 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF155Q12901 538 aaPredicted RBP8.37□□□□□ -1.07
HMGB1-203ENST00000341423 ERV3-1Q14264 604 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 CSRP2Q16527 193 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 PLEKHO2Q8TD55 490 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 DPF1Q92782 380 aa8.37□□□□□ -1.07
HMGB1-203ENST00000341423 ELF4Q99607 663 aaPredicted RBP8.37□□□□□ -1.07
HMGB1-203ENST00000341423 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.37□□□□□ -1.074e-6■□□□□ 9.4
HMGB1-203ENST00000341423 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.37□□□□□ -1.07
HMGB1-203ENST00000341423 TMEM114B3SHH9 223 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 BRINP1O60477 761 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 PSMD10O75832 226 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 CYB5AP00167 134 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 HLA-DQA2P01906 255 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 TUBBP07437 444 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 ATP1A3P13637 1013 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 SHMT2P34897 504 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 DLSTP36957 453 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 ARHGDIBP52566 201 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 EMP2P54851 167 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 EEFSECP57772 596 aaKnown RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 MLC1Q15049 377 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 SMTNL2Q2TAL5 461 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 AGAP9Q5VTM2 703 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 SHC4Q6S5L8 630 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 UNQ6494/PRO21346Q6UXR6 183 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 ACAD11Q709F0 780 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 TRIM59Q8IWR1 403 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 TAS1R2Q8TE23 839 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 C16orf70Q9BSU1 422 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 RMI1Q9H9A7 625 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 MYBPHLA2RUH7 354 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 SOX1O00570 391 aaPredicted RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 CST8O60676 142 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 NOS3P29474 1203 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 CLCA4Q14CN2 919 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 GK5Q6ZS86 529 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 R3HCC1LQ7Z5L2 792 aaKnown RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 PNPLA1Q8N8W4 532 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 CNEP1R1Q8N9A8 125 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 PJA1Q8NG27 643 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 CLEC4DQ8WXI8 215 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 ZBED3Q96IU2 234 aaPredicted RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 DGAT2Q96PD7 388 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 NXT1Q9UKK6 140 aaKnown RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 RBM7Q9Y580 266 aaKnown RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 DVL2O14641 736 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 KLRC4O43908 158 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 IFNA14P01570 189 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 FAM163BP0C2L3 166 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 H2AFXP16104 143 aaPredicted RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF33BQ06732 778 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 METTL21CQ5VZV1 264 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 BORAQ6PGQ7 559 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 VN1R5Q7Z5H4 357 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 PTRH1Q86Y79 214 aaKnown RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 FAM20CQ8IXL6 584 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 OR4E2Q8NGC2 313 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 NEK7Q8TDX7 302 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 ABHD5Q8WTS1 349 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 SLC39A7Q92504 469 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 EZH1Q92800 747 aaPredicted RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 AZIN2Q96A70 460 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 FAM136AQ96C01 138 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 MANSC1Q9H8J5 431 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 NMUR1Q9HB89 426 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 KCNJ16Q9NPI9 418 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 GPATCH2LQ9NWQ4 482 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 CNOT1A5YKK6 2376 aaKnown RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 LCHNA4D1U4 455 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 GOLGA8RI6L899 631 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 LINC01565O15544 149 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 GLSO94925 669 aaPredicted RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 NQO1P15559 274 aaKnown RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 WARSP23381 471 aaKnown RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 CCNHP51946 323 aaPredicted RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 CCNG1P51959 295 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 RAPSNQ13702 412 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 GRAMD1CQ8IYS0 662 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 DAZLQ92904 295 aaKnown RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 IGSF8Q969P0 613 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 MMABQ96EY8 250 aaPredicted RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 XAB2Q9HCS7 855 aaKnown RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 ZNF304Q9HCX3 659 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 HCFC1R1Q9NWW0 138 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 KCNU1A8MYU2 1149 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 SERPINH1P50454 418 aaKnown RBP8.36□□□□□ -1.07
HMGB1-203ENST00000341423 ACTG1P63261 375 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 TGFBR3Q03167 851 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 C22orf39Q6P5X5 142 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 RNF44Q7L0R7 432 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 PMF1-BGLAPU3KQ54 211 aa8.36□□□□□ -1.07
HMGB1-203ENST00000341423 E9PCH4 1651 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 CYP3A7-CYP3A51PA0A087WV96 503 aa8.35□□□□□ -1.07
HMGB1-203ENST00000341423 AKAP3O75969 853 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms