RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 HS3ST1O14792 307 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 OGG1O15527 345 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 PORP16435 677 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-201ENST00000326004 ZNF12P17014 697 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 ITGB8P26012 769 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 MRPL12P52815 198 aaKnown RBP3.34□□□□□ -1.87
HMGB1-201ENST00000326004 NANOS2P60321 138 aaKnown RBP3.34□□□□□ -1.87
HMGB1-201ENST00000326004 IRX6P78412 446 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-201ENST00000326004 DDR1Q08345 913 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 SREBF2Q12772 1141 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 MYBPHQ13203 477 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 TNFAIP1Q13829 316 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 NFATC4Q14934 902 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 DECR1Q16698 335 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 MYLK3Q32MK0 819 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 ZNF805Q5CZA5 627 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 PAPPA-AS1Q5QFB9 102 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 RARS2Q5T160 578 aaKnown RBP3.34□□□□□ -1.87
HMGB1-201ENST00000326004 LRIF1Q5T3J3 769 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 WDR73Q6P4I2 378 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 CREB3L2Q70SY1 520 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 SDCCAG8Q86SQ7 713 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-201ENST00000326004 GLCCI1Q86VQ1 547 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 TAGAPQ8N103 731 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 BEST3Q8N1M1 668 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 PGBD5Q8N414 524 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 PCDH20Q8N6Y1 951 aaKnown RBP3.34□□□□□ -1.87
HMGB1-201ENST00000326004 ZNF114Q8NC26 417 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 HJURPQ8NCD3 748 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-201ENST00000326004 OR1J2Q8NGS2 313 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 OR8K5Q8NH50 307 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 TMED6Q8WW62 240 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 DNAAF4Q8WXU2 420 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 RND1Q92730 232 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 NEUROG1Q92886 237 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 TAAR8Q969N4 342 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 ORAI1Q96D31 301 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 FEM1CQ96JP0 617 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 EGLN2Q96KS0 407 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 ZNF385AQ96PM9 386 aaKnown RBP3.34□□□□□ -1.87
HMGB1-201ENST00000326004 NUDCD1Q96RS6 583 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 FIZ1Q96SL8 496 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 SPRY4Q9C004 299 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 TMEM39BQ9GZU3 492 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 EPB41L5Q9HCM4 733 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 CD93Q9NPY3 652 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 SETD4Q9NVD3 440 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 MTMR10Q9NXD2 777 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 NENFQ9UMX5 172 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 EXO1Q9UQ84 846 aaKnown RBP3.34□□□□□ -1.87
HMGB1-201ENST00000326004 TMEM5Q9Y2B1 443 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 CMAHPQ9Y471 501 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 LOXL2Q9Y4K0 774 aa3.34□□□□□ -1.87
HMGB1-201ENST00000326004 PDS5BQ9NTI5 1447 aa3.34□□□□□ -1.88
HMGB1-201ENST00000326004 ADGRL1O94910 1474 aa3.34□□□□□ -1.88
HMGB1-201ENST00000326004 ARHGEF40Q8TER5 1519 aa3.34□□□□□ -1.88
HMGB1-201ENST00000326004 SMAD9O15198 467 aaKnown RBP3.33□□□□□ -1.88
HMGB1-201ENST00000326004 KCNN4O15554 427 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 KCNAB3O43448 404 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 TPPPO94811 219 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 CLDN14O95500 239 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 ICAM1P05362 532 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 ANXA7P20073 488 aaKnown RBP3.33□□□□□ -1.88
HMGB1-201ENST00000326004 GCH1P30793 250 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 GPR143P51810 404 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 SNX16P57768 344 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 DSCR9P59020 149 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 TAS2R38P59533 333 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 ZXDBP98169 803 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 KIF5AQ12840 1032 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 ZNF155Q12901 538 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-201ENST00000326004 FHL1Q13642 323 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 RGMBQ6NW40 437 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 NRROSQ86YC3 692 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 ARID3BQ8IVW6 561 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-201ENST00000326004 MCEMP1Q8IX19 187 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 C17orf53Q8N3J3 647 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-201ENST00000326004 THAP6Q8TBB0 222 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 TANKQ92844 425 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 JAKMIP2Q96AA8 810 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 RTP4Q96DX8 246 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 SAT2Q96F10 170 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-201ENST00000326004 SCMH1Q96GD3 660 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 GRAMD2BQ96HH9 432 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 MED30Q96HR3 178 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 C3orf30Q96M34 536 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 MEIS3Q99687 375 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 TEX12Q9BXU0 123 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 IL25Q9H293 177 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 HIPK2Q9H2X6 1198 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 PIGMQ9H3S5 423 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 SEBOXQ9HB31 216 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-201ENST00000326004 OCIAD1Q9NX40 245 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 ZNF224Q9NZL3 707 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 C1RLQ9NZP8 487 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 SEC63Q9UGP8 760 aaKnown RBP3.33□□□□□ -1.88
HMGB1-201ENST00000326004 SIX4Q9UIU6 781 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 SNX8Q9Y5X2 465 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 MRC2Q9UBG0 1479 aa3.33□□□□□ -1.88
HMGB1-201ENST00000326004 SMCHD1A6NHR9 2005 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms