RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 NAT16Q8N8M0 369 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 ARNTL2Q8WYA1 636 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 ZNF347Q96SE7 839 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 ATXN3LQ9H3M9 355 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 NCKIPSDQ9NZQ3 722 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 SLC17A6Q9P2U8 582 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 IFT52Q9Y366 437 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 NME7Q9Y5B8 376 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 CORINQ9Y5Q5 1042 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 FYNP06241 537 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 TWF1Q12792 350 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 PRKAA1Q13131 559 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 CHSY3Q70JA7 882 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 GATAD2AQ86YP4 633 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 TTC9BQ8N6N2 239 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 ATP6V0D2Q8N8Y2 350 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 ZNF461Q8TAF7 563 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 ACMSDQ8TDX5 336 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 C11orf84Q9BUA3 381 aaPredicted RBP10.87□□□□□ -0.67
LSM3-201ENST00000306024 EGFL7Q9UHF1 273 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 SPEF1Q9Y4P9 236 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 GNAO1P09471 354 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 ENDOUP21128 410 aaKnown RBP10.87□□□□□ -0.67
LSM3-201ENST00000306024 ALDH4A1P30038 563 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 HPCAL1P37235 193 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 CLK1P49759 484 aaKnown RBP10.87□□□□□ -0.67
LSM3-201ENST00000306024 FASTKQ14296 549 aaKnown RBP10.87□□□□□ -0.67
LSM3-201ENST00000306024 SMU1Q2TAY7 513 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 PIGGQ5H8A4 983 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 TMEM240Q5SV17 173 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 C4orf22Q6V702 233 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 PRR23BQ6ZRT6 265 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 STRADAQ7RTN6 431 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 CDKL3Q8IVW4 592 aaPredicted RBP10.87□□□□□ -0.67
LSM3-201ENST00000306024 MICU2Q8IYU8 434 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 MINDY2Q8NBR6 621 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 LILRB4Q8NHJ6 448 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 ZNF597Q96LX8 424 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 RPRD1AQ96P16 312 aaPredicted RBP10.87□□□□□ -0.67
LSM3-201ENST00000306024 EBNA1BP2Q99848 306 aaKnown RBP10.87□□□□□ -0.67
LSM3-201ENST00000306024 TP63Q9H3D4 680 aaPredicted RBP10.87□□□□□ -0.67
LSM3-201ENST00000306024 IGFLR1Q9H665 355 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 SPAG4Q9NPE6 437 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 SLC39A10Q9ULF5 831 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 RWDD3Q9Y3V2 267 aa10.87□□□□□ -0.67
LSM3-201ENST00000306024 A0A096LPK6 155 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 PRSS51A0A1B0GVH4 220 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 DHRS12A0PJE2 317 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 DFFAO00273 331 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 SCAMP3O14828 347 aaKnown RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 SLC7A1P30825 629 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 ATP5C1P36542 298 aaKnown RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 PTPN9P43378 593 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 SLC7A2P52569 658 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 DEFA1P59665 94 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 DEFA3P59666 94 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 DAB2P98082 770 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 RHDQ02161 417 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 PRKCQQ04759 706 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 VAC14Q08AM6 782 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 HECTD3Q5T447 861 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 ZNF697Q5TEC3 545 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 FAM171BQ6P995 826 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 PAQR9Q6ZVX9 377 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 CANT1Q8WVQ1 401 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 POF1BQ8WVV4 589 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 SEPHS2Q99611 448 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 SPON2Q9BUD6 331 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 NPLQ9BXD5 320 aaPredicted RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 OLA1Q9NTK5 396 aaKnown RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 WDR70Q9NW82 654 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 SYBUQ9NX95 663 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 STMN3Q9NZ72 180 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 THSD7BQ9C0I4 1608 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 CCDC78A2IDD5 438 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 E7ENX8 843 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 ANGPT2O15123 496 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 ZNF26P17031 533 aaPredicted RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 NUMBP49757 651 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 CLK3P49761 638 aaKnown RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 TUBA1BP68363 451 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 ECT2LQ008S8 904 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 IMPG1Q17R60 797 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 PITRM1Q5JRX3 1037 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 TUBA1AQ71U36 451 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 CARM1Q86X55 608 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 DDIASQ8IXT1 998 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 SYTL1Q8IYJ3 562 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 TTC30BQ8N4P2 665 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 C2orf15Q8WU43 125 aaKnown RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 HDAC11Q96DB2 347 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 LRRC39Q96DD0 335 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 ASB9Q96DX5 294 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 REXO4Q9GZR2 422 aaKnown RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 NEK6Q9HC98 313 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 PRM3Q9NNZ6 103 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 SMOXQ9NWM0 555 aa10.86□□□□□ -0.67
LSM3-201ENST00000306024 IFT80Q9P2H3 777 aaPredicted RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 UXTQ9UBK9 157 aaPredicted RBP10.86□□□□□ -0.67
LSM3-201ENST00000306024 CEP350Q5VT06 3117 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms