RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 LRRC36Q1X8D7 754 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 DDX53Q86TM3 631 aaKnown RBP23.82■■□□□ 1.4
TRIM54-201ENST00000296098 ITIH5Q86UX2 942 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 SIDT2Q8NBJ9 832 aaKnown RBP23.82■■□□□ 1.4
TRIM54-201ENST00000296098 FUBP1Q96AE4 644 aaKnown RBP23.82■■□□□ 1.4
TRIM54-201ENST00000296098 SLC30A3Q99726 388 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 AKTIPQ9H8T0 292 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 FBRSL1Q9HCM7 1045 aaKnown RBP23.82■■□□□ 1.4
TRIM54-201ENST00000296098 TBX21Q9UL17 535 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 PKP3Q9Y446 797 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 PCDHB9Q9Y5E1 797 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 FBP2O00757 339 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 PIP5K1BO14986 540 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 OLFM2O95897 454 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 RPS17P08708 135 aaKnown RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 CLCN4P51793 760 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 LRP8Q14114 963 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 TXNDC8Q6A555 127 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 ZFP1Q6P2D0 407 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 TMEM154Q6P9G4 183 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 PLCD3Q8N3E9 789 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 BHLHE22Q8NFJ8 381 aaPredicted RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 MYO19Q96H55 970 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 RC3H2Q9HBD1 1191 aaKnown RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 IL21Q9HBE4 155 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 ZDHHC7Q9NXF8 308 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 ADA2Q9NZK5 511 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 C6orf203Q9P0P8 240 aaPredicted RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 COMMD10Q9Y6G5 202 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 BCAS2O75934 225 aaPredicted RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 ALDOCP09972 364 aaKnown RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 MSX2P35548 267 aaPredicted RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 ACADVLP49748 655 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 FOXA1P55317 472 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 AP1S1P61966 158 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 MRPS22P82650 360 aaKnown RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 MS4A2Q01362 244 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 PABPC1LQ4VXU2 614 aaKnown RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 ANKS6Q68DC2 871 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 PQLC1Q8N2U9 271 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 PCDH20Q8N6Y1 951 aaKnown RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 SNX31Q8N9S9 440 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 CD200R1Q8TD46 325 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 DLG3Q92796 817 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 KCNJ9Q92806 393 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 ALG14Q96F25 216 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 NR1H4Q96RI1 486 aaPredicted RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 MRPL40Q9NQ50 206 aaKnown RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 DNMT3BQ9UBC3 853 aaKnown RBP23.81■■□□□ 1.4
TRIM54-201ENST00000296098 SARDHQ9UL12 918 aa23.81■■□□□ 1.4
TRIM54-201ENST00000296098 KIAA1671Q9BY89 1806 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 A0A0U1RQS6 177 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 STX16O14662 325 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 MRASO14807 208 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 TSPAN12O95859 305 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 HDCP19113 662 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 PTGER3P43115 390 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 NAA20P61599 178 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 ZXDBP98169 803 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 TAS2R42Q7RTR8 314 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 FAM217AQ8IXS0 508 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 DDIASQ8IXT1 998 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 BHMTQ93088 406 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 PPP2R3CQ969Q6 453 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 LINGO1Q96FE5 620 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 KCNA7Q96RP8 456 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 GPR63Q9BZJ6 419 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 IL17CQ9P0M4 197 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 PTGDR2Q9Y5Y4 395 aa23.8■■□□□ 1.4
TRIM54-201ENST00000296098 E5RI56 91 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 ESR1P03372 595 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 PSMD8P48556 350 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 ADARP55265 1226 aaKnown RBP23.79■■□□□ 1.4
TRIM54-201ENST00000296098 IL2P60568 153 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 CACNG1Q06432 222 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 KIF19Q2TAC6 998 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 SFT2D3Q587I9 215 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 ARMC12Q5T9G4 340 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 STK40Q8N2I9 435 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 TTC16Q8NEE8 873 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 OR9I1Q8NGQ6 314 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 VCXQ9H320 206 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 MAGEE1Q9HCI5 957 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 SEMA4BQ9NPR2 832 aaPredicted RBP23.79■■□□□ 1.4
TRIM54-201ENST00000296098 MRPL17Q9NRX2 175 aaKnown RBP23.79■■□□□ 1.4
TRIM54-201ENST00000296098 SAGE1Q9NXZ1 904 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 LSM7Q9UK45 103 aaKnown RBP23.79■■□□□ 1.4
TRIM54-201ENST00000296098 MAFFQ9ULX9 164 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 MAGEA13PA6NCF6 341 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 KLK8O60259 260 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 DEFB103AP81534 67 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 TXNDC11Q6PKC3 985 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 LYSMD3Q7Z3D4 306 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 C2orf49Q9BVC5 232 aaPredicted RBP23.79■■□□□ 1.4
TRIM54-201ENST00000296098 C1QTNF3Q9BXJ4 246 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 TM6SF2Q9BZW4 377 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 SUCOQ9UBS9 1254 aaKnown RBP23.79■■□□□ 1.4
TRIM54-201ENST00000296098 SCOCQ9UIL1 159 aa23.79■■□□□ 1.4
TRIM54-201ENST00000296098 ABHD14A-ACY1A0A1B0GW23 586 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 ACOT8O14734 319 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms