RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CAMK1DQ8IU85 385 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 SKA2Q8WVK7 121 aaPredicted RBP16.54■□□□□ 0.24
VPS54-201ENST00000272322 LINGO1Q96FE5 620 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 C8orf48Q96LL4 319 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 POLG2Q9UHN1 485 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 SLC38A8A6NNN8 435 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 NME4O00746 187 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 COCHO43405 550 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 SNX2O60749 519 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 C1RP00736 705 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 GJA1P17302 382 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 STC1P52823 247 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 TCTN1Q2MV58 587 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 NADK2Q4G0N4 442 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 TPGS1Q6ZTW0 290 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 ADGRG6Q86SQ4 1221 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 FBXO22Q8NEZ5 403 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 TMIGD2Q96BF3 282 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 ERLEC1Q96DZ1 483 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 CCDC126Q96EE4 140 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 MAELQ96JY0 434 aaKnown RBP16.54■□□□□ 0.24
VPS54-201ENST00000272322 SLC25A23Q9BV35 468 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 VPS28Q9UK41 221 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 CHD7Q9P2D1 2997 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 INSIG1O15503 277 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 GNAO1P09471 354 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 TBCELQ5QJ74 424 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 MYLIPQ8WY64 445 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 MAP10Q9P2G4 905 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 NDUFAF1Q9Y375 327 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 ACSL4O60488 711 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 NDST3O95803 873 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 SLC10A3P09131 477 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 OXTRP30559 389 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 DNAJB13P59910 316 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 NFYCQ13952 458 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 CHST15Q7LFX5 561 aaPredicted RBP16.53■□□□□ 0.24
VPS54-201ENST00000272322 FNDC5Q8NAU1 212 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 PPM1MQ96MI6 270 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 GPR63Q9BZJ6 419 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 MARCH5Q9NX47 278 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 THEGQ9P2T0 379 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 CIDEBQ9UHD4 219 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 SLC44A4Q53GD3 710 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 MILR1Q7Z6M3 343 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 OFCC1Q8IZS5 231 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 BBS5Q8N3I7 341 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 SLCO4A1Q96BD0 722 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 MPP4Q96JB8 637 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 PRICKLE1Q96MT3 831 aaPredicted RBP16.53■□□□□ 0.24
VPS54-201ENST00000272322 AARSD1Q9BTE6 412 aaKnown RBP16.53■□□□□ 0.24
VPS54-201ENST00000272322 BOCQ9BWV1 1114 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 ARHGAP10A1A4S6 786 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 FGF1P05230 155 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 PARP15Q460N3 678 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 OTUD3Q5T2D3 398 aaPredicted RBP16.53■□□□□ 0.24
VPS54-201ENST00000272322 CCSAPQ6IQ19 270 aaPredicted RBP16.53■□□□□ 0.24
VPS54-201ENST00000272322 METTL25Q8N6Q8 603 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 TRIML2Q8N7C3 387 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 CLHC1Q8NHS4 586 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 ASB9Q96DX5 294 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 FUBP3Q96I24 572 aaKnown RBP eCLIP16.53■□□□□ 0.24
VPS54-201ENST00000272322 TNKS2Q9H2K2 1166 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 ZNHIT2Q9UHR6 403 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 MED16Q9Y2X0 877 aa16.53■□□□□ 0.24
VPS54-201ENST00000272322 C2orf81A6NN90 581 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 FDXRP22570 491 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 SLC11A2P49281 568 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 DGKQP52824 942 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 SP3Q02447 781 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 RAD51Q06609 339 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 UGT3A2Q3SY77 523 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 PAGE3Q5JUK9 113 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 ANKS6Q68DC2 871 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 LRRC8DQ7L1W4 858 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 MIER2Q8N344 545 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 OR10Q1Q8NGQ4 319 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 CYGBQ8WWM9 190 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 SEPT3Q9UH03 358 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 TRMT6Q9UJA5 497 aaKnown RBP16.52■□□□□ 0.24
VPS54-201ENST00000272322 DNMT3LQ9UJW3 386 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 VCANP13611 3396 aa16.52■□□□□ 0.24
VPS54-201ENST00000272322 H3BSA7 217 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 SOCS2O14508 198 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 TFAP2AP05549 437 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 FESP07332 822 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 HLA-DPA1P20036 260 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 HTR6P50406 440 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 FOXD4Q12950 439 aaPredicted RBP16.52■□□□□ 0.23
VPS54-201ENST00000272322 C6orf10Q5SRN2 563 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 SYVN1Q86TM6 617 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 ARHGAP18Q8N392 663 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 CBR4Q8N4T8 237 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 NAT16Q8N8M0 369 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 TMEM102Q8N9M5 508 aaPredicted RBP16.52■□□□□ 0.23
VPS54-201ENST00000272322 STAG3L4Q8TBR4 150 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 TTPALQ9BTX7 342 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 Q9H521 79 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 MRM3Q9HC36 420 aaKnown RBP16.52■□□□□ 0.23
VPS54-201ENST00000272322 INTS7Q9NVH2 962 aaKnown RBP16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms