RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TPRG1Q6ZUI0 275 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 Q6ZVL8 140 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 USP45Q70EL2 814 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 TRIM42Q8IWZ5 723 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 ESAMQ96AP7 390 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 TSPAN17Q96FV3 270 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 WRAP53Q9BUR4 548 aaKnown RBP16.39■□□□□ 0.21
USP4-201ENST00000265560 DZANK1Q9NVP4 752 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 CRLS1Q9UJA2 301 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 A0A087X1B8 175 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 SOBPA7XYQ1 873 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 CDC7O00311 574 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 HOXC11O43248 304 aaPredicted RBP16.39■□□□□ 0.21
USP4-201ENST00000265560 TRIM16O95361 564 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 RUNX3Q13761 415 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 ATP13A5Q4VNC0 1218 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 ARL13AQ5H913 290 aaPredicted RBP16.39■□□□□ 0.21
USP4-201ENST00000265560 AGAP9Q5VTM2 703 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 METTL3Q86U44 580 aaKnown RBP16.39■□□□□ 0.21
USP4-201ENST00000265560 ZNF398Q8TD17 642 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 LKAAEAR1Q8TD35 194 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 EEF1AKMT1Q8WVE0 214 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 C7orf26Q96N11 449 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 RILPQ96NA2 401 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 SLC2A11Q9BYW1 496 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 PCDH12Q9NPG4 1184 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 IL36AQ9UHA7 158 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 ZMYM5Q9UJ78 669 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 RIMKLBQ9ULI2 386 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 E5RI56 91 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 SIX3O95343 332 aaPredicted RBP16.39■□□□□ 0.21
USP4-201ENST00000265560 CBX6O95503 412 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 PKMP14618 531 aaKnown RBP16.39■□□□□ 0.21
USP4-201ENST00000265560 TCF3P15923 654 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 ETV3P41162 512 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 TTPAP49638 278 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 CACNG1Q06432 222 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 ADAM15Q13444 863 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 TECRLQ5HYJ1 363 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 GRAMD4Q6IC98 578 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 SERPINA13PQ6UXR4 307 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 HSD11B1LQ7Z5J1 315 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 CPNE9Q8IYJ1 553 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 KIF2BQ8N4N8 673 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 CPEB1Q9BZB8 566 aaKnown RBP16.39■□□□□ 0.21
USP4-201ENST00000265560 CEP44Q9C0F1 390 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 THG1LQ9NWX6 298 aaKnown RBP16.39■□□□□ 0.21
USP4-201ENST00000265560 TAS2R13Q9NYV9 303 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 COQ6Q9Y2Z9 468 aa16.39■□□□□ 0.21
USP4-201ENST00000265560 POU2F2P09086 479 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 C1SP09871 688 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 LAMP2P13473 410 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 OPRD1P41143 372 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 DMC1Q14565 340 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 MAVSQ7Z434 540 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 LMNTD2Q8IXW0 634 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 SCG3Q8WXD2 468 aaKnown RBP16.38■□□□□ 0.21
USP4-201ENST00000265560 CDCA3Q99618 268 aaPredicted RBP16.38■□□□□ 0.21
USP4-201ENST00000265560 MRPL57Q9BQC6 102 aaKnown RBP16.38■□□□□ 0.21
USP4-201ENST00000265560 INTS10Q9NVR2 710 aaKnown RBP16.38■□□□□ 0.21
USP4-201ENST00000265560 UBXN8O00124 270 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 IL1BP01584 269 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 TIMP2P16035 220 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 TARSP26639 723 aaKnown RBP16.38■□□□□ 0.21
USP4-201ENST00000265560 LTBRP36941 435 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 SCTRP47872 440 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 CDH13P55290 713 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 PFKPQ01813 784 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 ZNF234Q14588 700 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 TSNQ15631 228 aaKnown RBP16.38■□□□□ 0.21
USP4-201ENST00000265560 C10orf67Q8IYJ2 551 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.38■□□□□ 0.21
USP4-201ENST00000265560 PIWIL2Q8TC59 973 aaKnown RBP16.38■□□□□ 0.21
USP4-201ENST00000265560 TMEM237Q96Q45 408 aa16.38■□□□□ 0.21
USP4-201ENST00000265560 MUC3AQ02505 3323 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 GOLGA8QA0A0J9YX86 632 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 GOLGA8OA6NCC3 632 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 C16orf96A6NNT2 1141 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 GOLGA8NF8WBI6 632 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 PPP6CO00743 305 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 CD1DP15813 335 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 XPAP23025 273 aaPredicted RBP16.37■□□□□ 0.21
USP4-201ENST00000265560 LIPMQ5VYY2 423 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 TRIM67Q6ZTA4 783 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 OSBPL1AQ9BXW6 950 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 HCN2Q9UL51 889 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 G3BP2Q9UN86 482 aaKnown RBP16.37■□□□□ 0.21
USP4-201ENST00000265560 SLC8A2Q9UPR5 921 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 NEMP1O14524 444 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 COL6A2P12110 1019 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 PSMC3P17980 439 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 SEC13P55735 322 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 RPL26P61254 145 aaKnown RBP16.37■□□□□ 0.21
USP4-201ENST00000265560 ARHGEF7Q14155 803 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 PTRHD1Q6GMV3 140 aaKnown RBP16.37■□□□□ 0.21
USP4-201ENST00000265560 KLC3Q6P597 504 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 MMAAQ8IVH4 418 aaKnown RBP16.37■□□□□ 0.21
USP4-201ENST00000265560 TERB1Q8NA31 727 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 MAPK15Q8TD08 544 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 TUBGCP5Q96RT8 1024 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms