RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 NLE1Q9NVX2 485 aaPredicted RBP11.53□□□□□ -0.56
VPS4A-201ENST00000254950 B4GALT6Q9UBX8 382 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 IRAK3Q9Y616 596 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 TTC3P53804 2025 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 IPO13O94829 963 aaKnown RBP11.53□□□□□ -0.56
VPS4A-201ENST00000254950 CLCN4P51793 760 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 KCNK10P57789 538 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 CHRNA6Q15825 494 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 TCTN1Q2MV58 587 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 NCEH1Q6PIU2 408 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 VITQ6UXI7 678 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 CILP2Q8IUL8 1156 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 ZBTB2Q8N680 514 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 ZNF513Q8N8E2 541 aaPredicted RBP11.53□□□□□ -0.56
VPS4A-201ENST00000254950 TRPC4APQ8TEL6 797 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 OSCP1Q8WVF1 389 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 CCDC124Q96CT7 223 aaKnown RBP11.53□□□□□ -0.56
VPS4A-201ENST00000254950 MED8Q96G25 268 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 SPATS2LQ9NUQ6 558 aaKnown RBP11.53□□□□□ -0.56
VPS4A-201ENST00000254950 ZNF212Q9UDV6 495 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 NDRG2Q9UN36 371 aaKnown RBP11.53□□□□□ -0.56
VPS4A-201ENST00000254950 TK2O00142 265 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 ATG13O75143 517 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 HLA-EP13747 358 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 PTPRCAPQ14761 206 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 GPNMBQ14956 572 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 GALNTL6Q49A17 601 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 CACHD1Q5VU97 1274 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.53□□□□□ -0.56
VPS4A-201ENST00000254950 ZYG11AQ6WRX3 759 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 KIF2BQ8N4N8 673 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 ITFG1Q8TB96 612 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 MYOCQ99972 504 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 CACNB4O00305 520 aaPredicted RBP11.52□□□□□ -0.56
VPS4A-201ENST00000254950 SRCP12931 536 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 HTR1BP28222 390 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 HOXD9P28356 352 aaPredicted RBP11.52□□□□□ -0.56
VPS4A-201ENST00000254950 STC1P52823 247 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 BTKQ06187 659 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 LRRC66Q68CR7 880 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 ARMC6Q6NXE6 501 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 C16orf89Q6UX73 402 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 CPNE9Q8IYJ1 553 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 FAM9CQ8IZT9 166 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 HDDC3Q8N4P3 179 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 C2CD4AQ8NCU7 369 aaPredicted RBP11.52□□□□□ -0.56
VPS4A-201ENST00000254950 PPWD1Q96BP3 646 aaKnown RBP11.52□□□□□ -0.56
VPS4A-201ENST00000254950 ZNF778Q96MU6 729 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 TRIM15Q9C019 465 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 HAO1Q9UJM8 370 aa11.52□□□□□ -0.56
VPS4A-201ENST00000254950 ARHGAP10A1A4S6 786 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 LYPLA1O75608 230 aaPredicted RBP11.52□□□□□ -0.57
VPS4A-201ENST00000254950 ALDH1A2O94788 518 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 IGLV3-27P01718 113 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 LMNAP02545 664 aaKnown RBP11.52□□□□□ -0.57
VPS4A-201ENST00000254950 SRPRAP08240 638 aaKnown RBP11.52□□□□□ -0.57
VPS4A-201ENST00000254950 EPB42P16452 691 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 CALB2P22676 271 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 SERPINB5P36952 375 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 TPD52P55327 224 aaPredicted RBP11.52□□□□□ -0.57
VPS4A-201ENST00000254950 TCEAL5Q5H9L2 206 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 CRTC3Q6UUV7 619 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 ANGPTL8Q6UXH0 198 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 SORCS1Q8WY21 1168 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 MRPL38Q96DV4 380 aaKnown RBP11.52□□□□□ -0.57
VPS4A-201ENST00000254950 PRICKLE1Q96MT3 831 aaPredicted RBP11.52□□□□□ -0.57
VPS4A-201ENST00000254950 THTPAQ9BU02 230 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 STN1Q9H668 368 aaKnown RBP11.52□□□□□ -0.57
VPS4A-201ENST00000254950 ZDHHC3Q9NYG2 299 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 PCDH10Q9P2E7 1040 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 ZNHIT2Q9UHR6 403 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 ACTL7AQ9Y615 435 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 A0A0J9YYE9 177 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 NPEPPSL1A6NEC2 478 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 LEFTY1O75610 366 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 KAT7O95251 611 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 TRBC1P01850 177 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 KELP23276 732 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 ABRQ12979 859 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 MUM1Q2TAK8 710 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 LONP2Q86WA8 852 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 CNDP1Q96KN2 507 aa11.52□□□□□ -0.57
VPS4A-201ENST00000254950 GATA5Q9BWX5 397 aaPredicted RBP11.52□□□□□ -0.57
VPS4A-201ENST00000254950 TDRKHQ9Y2W6 561 aaKnown RBP11.52□□□□□ -0.57
VPS4A-201ENST00000254950 TRAFD1O14545 582 aaPredicted RBP11.51□□□□□ -0.57
VPS4A-201ENST00000254950 HNRNPLP14866 589 aaKnown RBP eCLIP11.51□□□□□ -0.57
VPS4A-201ENST00000254950 HK2P52789 917 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 CDH13P55290 713 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 RNF43Q68DV7 783 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 BHLHA9Q7RTU4 235 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 FLCNQ8NFG4 579 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 C7orf26Q96N11 449 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 AARSD1Q9BTE6 412 aaKnown RBP11.51□□□□□ -0.57
VPS4A-201ENST00000254950 GID8Q9NWU2 228 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 TAGLN3Q9UI15 199 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 NIPSNAP2O75323 286 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 F7P08709 466 aaPredicted RBP11.51□□□□□ -0.57
VPS4A-201ENST00000254950 EEF1DP29692 281 aaKnown RBP11.51□□□□□ -0.57
VPS4A-201ENST00000254950 GRIA2P42262 883 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 IRF8Q02556 426 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms