RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 ERVK-10P10266 1014 aa27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 CA5AP35218 305 aa27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 PMS2P54278 862 aa27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 TCF15Q12870 199 aa27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 ITGA9Q13797 1035 aa27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 ZC3H14Q6PJT7 736 aaKnown RBP27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 SNX20Q7Z614 316 aa27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 KCNMB4Q86W47 210 aa27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 PNPLA1Q8N8W4 532 aa27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 CERS2Q96G23 380 aa27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 ZC3H10Q96K80 434 aaKnown RBP27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 PRRX2Q99811 253 aa27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 CATSPERZQ9NTU4 200 aa27.07■■□□□ 1.92
CHMP4B-201ENST00000217402 FOXN2P32314 431 aa27.06■■□□□ 1.92
CHMP4B-201ENST00000217402 CACNG1Q06432 222 aa27.06■■□□□ 1.92
CHMP4B-201ENST00000217402 STAT4Q14765 748 aa27.06■■□□□ 1.92
CHMP4B-201ENST00000217402 PSAPL1Q6NUJ1 521 aa27.06■■□□□ 1.92
CHMP4B-201ENST00000217402 TAS2R42Q7RTR8 314 aa27.06■■□□□ 1.92
CHMP4B-201ENST00000217402 NLRP8Q86W28 1048 aa27.06■■□□□ 1.92
CHMP4B-201ENST00000217402 HEATR4Q86WZ0 1026 aa27.06■■□□□ 1.92
CHMP4B-201ENST00000217402 TTC25Q96NG3 672 aa27.06■■□□□ 1.92
CHMP4B-201ENST00000217402 TXLNGYQ9BZA5 131 aa27.06■■□□□ 1.92
CHMP4B-201ENST00000217402 WDR26Q9H7D7 661 aa27.06■■□□□ 1.92
CHMP4B-201ENST00000217402 MARCH4Q9P2E8 410 aaPredicted RBP27.06■■□□□ 1.92
CHMP4B-201ENST00000217402 CRLS1Q9UJA2 301 aa27.06■■□□□ 1.92
CHMP4B-201ENST00000217402 THOC5Q13769 683 aaKnown RBP27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 FASTKD1Q53R41 847 aaKnown RBP27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 HSP90AA5PQ58FG0 334 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 PDPK2PQ6A1A2 396 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 TRIM74Q86UV6 250 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 PIANPQ8IYJ0 282 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 DNASE2BQ8WZ79 361 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 BMFQ96LC9 184 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 ARFGAP3Q9NP61 516 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 TMPRSS11EQ9UL52 423 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 TCRBV9S1A1TA0A576 114 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 PYGLP06737 847 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 NEPROQ6NW34 567 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 EMBQ6PCB8 327 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 ADAMTSL4Q6UY14 1074 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 LDB1Q86U70 411 aaPredicted RBP27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 DTX3LQ8TDB6 740 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 TM9SF3Q9HD45 589 aa27.05■■□□□ 1.92
CHMP4B-201ENST00000217402 CD3EAPO15446 510 aaKnown RBP27.04■■□□□ 1.92
CHMP4B-201ENST00000217402 GSTA2P09210 222 aa27.04■■□□□ 1.92
CHMP4B-201ENST00000217402 SEMA3AQ14563 771 aa27.04■■□□□ 1.92
CHMP4B-201ENST00000217402 LAYNQ6UX15 382 aa27.04■■□□□ 1.92
CHMP4B-201ENST00000217402 TRMT10CQ7L0Y3 403 aaKnown RBP27.04■■□□□ 1.92
CHMP4B-201ENST00000217402 GDAP1Q8TB36 358 aa27.04■■□□□ 1.92
CHMP4B-201ENST00000217402 GLYATL1Q969I3 302 aa27.04■■□□□ 1.92
CHMP4B-201ENST00000217402 IARS2Q9NSE4 1012 aaKnown RBP27.04■■□□□ 1.92
CHMP4B-201ENST00000217402 HS3ST3A1Q9Y663 406 aa27.04■■□□□ 1.92
CHMP4B-201ENST00000217402 A6NNZ2 444 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 PIAS1O75925 651 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 F7P08709 466 aaPredicted RBP27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 CDK3Q00526 305 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 GPR33Q49SQ1 333 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 ZNF470Q6ECI4 717 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 KYAT3Q6YP21 454 aaKnown RBP27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 UHMK1Q8TAS1 419 aaKnown RBP27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 FBF1Q8TES7 1133 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 BTN2A2Q8WVV5 523 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 TBRG4Q969Z0 631 aaKnown RBP eCLIP27.03■■□□□ 1.921e-11■■■■■ 38.3
CHMP4B-201ENST00000217402 FUBP1Q96AE4 644 aaKnown RBP27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 VPS35Q96QK1 796 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 APOOQ9BUR5 198 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 LGR4Q9BXB1 951 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 SMOXQ9NWM0 555 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 MOCS1Q9NZB8 636 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 SLC17A6Q9P2U8 582 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 CNOT6Q9ULM6 557 aaKnown RBP27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 USP34Q70CQ2 3546 aa27.03■■□□□ 1.92
CHMP4B-201ENST00000217402 SPAG6O75602 509 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 SLC25A14O95258 325 aaPredicted RBP27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 PHBP35232 272 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 TRIM23P36406 574 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 RACK1P63244 317 aaKnown RBP27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 MAP9Q49MG5 647 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 ZNF648Q5T619 568 aaPredicted RBP27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 GPRC6AQ5T6X5 926 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 ABI3BPQ7Z7G0 1075 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 SERPINA9Q86WD7 417 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 PHYKPLQ8IUZ5 450 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 NXPE1Q8N323 547 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 OR13H1Q8NG92 308 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 C1orf216Q8TAB5 229 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 ULK4Q96C45 1275 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 SGSM3Q96HU1 749 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 HIC2Q96JB3 615 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 FAM167BQ9BTA0 163 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 TEX101Q9BY14 249 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 PHPT1Q9NRX4 125 aaPredicted RBP27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 GON4LQ3T8J9 2241 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 SDK1Q7Z5N4 2213 aa27.02■■□□□ 1.92
CHMP4B-201ENST00000217402 MTX2O75431 263 aa27.01■■□□□ 1.92
CHMP4B-201ENST00000217402 TEAD1P28347 426 aa27.01■■□□□ 1.92
CHMP4B-201ENST00000217402 STX2P32856 288 aa27.01■■□□□ 1.92
CHMP4B-201ENST00000217402 PFN3P60673 137 aa27.01■■□□□ 1.92
CHMP4B-201ENST00000217402 FRG1Q14331 258 aaKnown RBP27.01■■□□□ 1.92
CHMP4B-201ENST00000217402 MRNIPQ6NTE8 343 aa27.01■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms