RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 TDGQ13569 410 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 CAMK1Q14012 370 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 BOP1Q14137 746 aaKnown RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 LARS2Q15031 903 aaKnown RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 PON2Q15165 354 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 ZNF174Q15697 407 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 DECR1Q16698 335 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 FAM83EQ2M2I3 478 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 ZNF829Q3KNS6 432 aaPredicted RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 NADK2Q4G0N4 442 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 BCL7AQ4VC05 210 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 CLVS2Q5SYC1 327 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 BEND6Q5SZJ8 279 aaPredicted RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 THEM4Q5T1C6 240 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 ARMC12Q5T9G4 340 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 THEMIS2Q5TEJ8 643 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 PLA2G4FQ68DD2 849 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 KIAA1161Q6NSJ0 714 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 ESRP1Q6NXG1 681 aaKnown RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 TTI2Q6NXR4 508 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 TTC23LQ6PF05 361 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 NCEH1Q6PIU2 408 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 BLOC1S2Q6QNY1 142 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 RSPO2Q6UXX9 243 aaPredicted RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 RBPMS2Q6ZRY4 209 aaKnown RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 PIK3AP1Q6ZUJ8 805 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 RNF44Q7L0R7 432 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 CHST9Q7L1S5 443 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 SYVN1Q86TM6 617 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 CUZD1Q86UP6 607 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 ZNF573Q86YE8 665 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 MIB1Q86YT6 1006 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 CCDC103Q8IW40 242 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 OFCC1Q8IZS5 231 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 CADM3Q8N126 398 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 FSTL5Q8N475 847 aaPredicted RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 SH2D3CQ8N5H7 860 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 AMER2Q8N7J2 671 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.02□□□□□ -1.93
VIM-210ENST00000637053 IQUBQ8NA54 791 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 NETO2Q8NC67 525 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 KREMEN2Q8NCW0 462 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 MCPH1Q8NEM0 835 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 AGBL3Q8NEM8 1001 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 STEAP2Q8NFT2 490 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 OR52J3Q8NH60 311 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 SEC14L1Q92503 715 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 BCL2L2Q92843 193 aaPredicted RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 PPP2R3CQ969Q6 453 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 VOPP1Q96AW1 172 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 RHBDF1Q96CC6 855 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 GRAMD1AQ96CP6 724 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 TMA16Q96EY4 203 aaKnown RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 PEX11GQ96HA9 241 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 SLC41A2Q96JW4 573 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 MRGPRX1Q96LB2 322 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 NR1H4Q96RI1 486 aaPredicted RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 FIZ1Q96SL8 496 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 CGREF1Q99674 301 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 PIP5K1AQ99755 562 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 RBM4BQ9BQ04 359 aaKnown RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 KCNS3Q9BQ31 491 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 FERMT1Q9BQL6 677 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 HTATIP2Q9BUP3 242 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 SLC25A23Q9BV35 468 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 RBM4Q9BWF3 364 aaKnown RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 C1orf43Q9BWL3 253 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 PHF7Q9BWX1 381 aaPredicted RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 RTN4RQ9BZR6 473 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 IMPG2Q9BZV3 1241 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 TRIM4Q9C037 500 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 DCLK3Q9C098 648 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 MEGF9Q9H1U4 602 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 VCX2Q9H322 139 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 C12orf65Q9H3J6 166 aaKnown RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 TDRD3Q9H7E2 651 aaKnown RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 KAT14Q9H8E8 782 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 METTL7AQ9H8H3 244 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 CYP3A43Q9HB55 503 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 SMURF1Q9HCE7 757 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 PCDH18Q9HCL0 1135 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 TRPC7Q9HCX4 862 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 GPRC5CQ9NQ84 441 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 PCDHB16Q9NRJ7 776 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 PNPOQ9NVS9 261 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 TRNAU1APQ9NX07 287 aaKnown RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 P4HTMQ9NXG6 502 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 KLHL28Q9NXS3 571 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 ARHGAP20Q9P2F6 1191 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 TRPC4Q9UBN4 977 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 GULP1Q9UBP9 304 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 ZNF70Q9UC06 446 aaPredicted RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 SLC7A8Q9UHI5 535 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 SLCO3A1Q9UIG8 710 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 CNOT7Q9UIV1 285 aaKnown RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 MSRAQ9UJ68 235 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 OSGIN1Q9UJX0 560 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 TSPAN16Q9UKR8 245 aa3.02□□□□□ -1.93
VIM-210ENST00000637053 PAIP2BQ9ULR5 123 aaKnown RBP3.02□□□□□ -1.93
VIM-210ENST00000637053 DAPP1Q9UN19 280 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms