RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 PRKD2Q9BZL6 878 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 SCUBE2Q9NQ36 999 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 FCF1Q9Y324 198 aaKnown RBP11.5□□□□□ -0.57
CLN6-217ENST00000636964 PLXNA4Q9HCM2 1894 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 A0A088AWK7 358 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 MEI4A8MW99 385 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 K7ERQ8 282 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 CD160O95971 181 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 CSKP41240 450 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 MAGEA12P43365 314 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 TNK2Q07912 1038 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 ITGA9Q13797 1035 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 GK3PQ14409 553 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 CRY1Q16526 586 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 ATG14Q6ZNE5 492 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 CHST9Q7L1S5 443 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 CCDC117Q8IWD4 279 aaPredicted RBP11.5□□□□□ -0.57
CLN6-217ENST00000636964 C7orf57Q8NEG2 295 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 ZFP28Q8NHY6 868 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 KCTD4Q8WVF5 259 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 CLP1Q92989 425 aaKnown RBP11.5□□□□□ -0.57
CLN6-217ENST00000636964 TCEAL4Q96EI5 215 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 HSPBAP1Q96EW2 488 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 C17orf80Q9BSJ5 609 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 FEM1AQ9BSK4 669 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 SLC46A2Q9BY10 475 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 LRRC3Q9BY71 257 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 TASP1Q9H6P5 420 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 MRM3Q9HC36 420 aaKnown RBP11.5□□□□□ -0.57
CLN6-217ENST00000636964 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.5□□□□□ -0.57
CLN6-217ENST00000636964 MARCH4Q9P2E8 410 aaPredicted RBP11.5□□□□□ -0.57
CLN6-217ENST00000636964 COPG2Q9UBF2 871 aa11.5□□□□□ -0.57
CLN6-217ENST00000636964 FNDC3AQ9Y2H6 1198 aaKnown RBP11.5□□□□□ -0.57
CLN6-217ENST00000636964 INSIG1O15503 277 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 FGF3P11487 239 aaPredicted RBP11.49□□□□□ -0.57
CLN6-217ENST00000636964 CPA3P15088 417 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 CPOXP36551 454 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 PDK3Q15120 406 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 NADK2Q4G0N4 442 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 FAM91A1Q658Y4 838 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 MBLAC2Q68D91 279 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 GRAMD2AQ8IUY3 354 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 APCDD1Q8J025 514 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 C2CD4AQ8NCU7 369 aaPredicted RBP11.49□□□□□ -0.57
CLN6-217ENST00000636964 OR6K2Q8NGY2 324 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 POF1BQ8WVV4 589 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 DGCR14Q96DF8 476 aaKnown RBP11.49□□□□□ -0.57
CLN6-217ENST00000636964 NSMCE4AQ9NXX6 385 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 RUVBL2Q9Y230 463 aaKnown RBP11.49□□□□□ -0.57
CLN6-217ENST00000636964 CCL26Q9Y258 94 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 CHD5Q8TDI0 1954 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 SMIM31A0A1B0GVY4 71 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 BIRC5O15392 142 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 GLUD1P00367 558 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 MPOP05164 745 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 SLC35E2BP0CK96 405 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 PRSS56P0CW18 603 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 BMP1P13497 986 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 ADARP55265 1226 aaKnown RBP11.49□□□□□ -0.57
CLN6-217ENST00000636964 TAS2R39P59534 338 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 KDSRQ06136 332 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 MYLK3Q32MK0 819 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 ATXN7L2Q5T6C5 722 aaPredicted RBP11.49□□□□□ -0.57
CLN6-217ENST00000636964 ZNF697Q5TEC3 545 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 CNTN4Q8IWV2 1026 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 LPCAT1Q8NF37 534 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 ISL2Q96A47 359 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 ASIC4Q96FT7 647 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 FEM1CQ96JP0 617 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 SCYL1Q96KG9 808 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 RAD9AQ99638 391 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 NMRAL1Q9HBL8 299 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 S100A14Q9HCY8 104 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 CRYL1Q9Y2S2 319 aa11.49□□□□□ -0.57
CLN6-217ENST00000636964 A0A0B4J203 849 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 MROH6A6NGR9 719 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 TK2O00142 265 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 KLF11O14901 512 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 OLFM2O95897 454 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 SLC5A2P31639 672 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 IRS1P35568 1242 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 AP2B1P63010 937 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 ZBTB16Q05516 673 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 CCNIQ14094 377 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 TLR1Q15399 786 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 UGP2Q16851 508 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 TRMT5Q32P41 509 aaKnown RBP11.48□□□□□ -0.57
CLN6-217ENST00000636964 FIP1L1Q6UN15 594 aaKnown RBP11.48□□□□□ -0.57
CLN6-217ENST00000636964 Q6ZNB5 142 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 DHDDSQ86SQ9 333 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 TMPRSS6Q8IU80 811 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 ELMOD1Q8N336 334 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 TDRD5Q8NAT2 981 aaKnown RBP11.48□□□□□ -0.57
CLN6-217ENST00000636964 TM6SF2Q9BZW4 377 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 DCAF16Q9NXF7 216 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 MTF2Q9Y483 593 aaPredicted RBP11.48□□□□□ -0.57
CLN6-217ENST00000636964 MYO9BQ13459 2157 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 C15orf38-AP3S2A0A0A6YYH1 394 aa11.48□□□□□ -0.57
CLN6-217ENST00000636964 TYW5A2RUC4 315 aaKnown RBP11.48□□□□□ -0.57
CLN6-217ENST00000636964 AP1G1O43747 822 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms