RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SLC30A1Q9Y6M5 507 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 MID1O15344 667 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 KLF8O95600 359 aaPredicted RBP20.01■□□□□ 0.79
CLN3-250ENST00000636839 COL9A1P20849 921 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 CRHR1P34998 444 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 SPAM1P38567 509 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 ETV4P43268 484 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 SATB1Q01826 763 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 CACNG1Q06432 222 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 CNTN1Q12860 1018 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 NFATC2Q13469 925 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 CAMK2GQ13555 558 aaPredicted RBP20.01■□□□□ 0.79
CLN3-250ENST00000636839 DPPA4Q7L190 304 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 LMNTD2Q8IXW0 634 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 AADATQ8N5Z0 425 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 TXNDC5Q8NBS9 432 aaKnown RBP20.01■□□□□ 0.79
CLN3-250ENST00000636839 HCAR2Q8TDS4 363 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 DNASE1L2Q92874 299 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 BOCQ9BWV1 1114 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 SERGEFQ9UGK8 458 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 COQ6Q9Y2Z9 468 aa20.01■□□□□ 0.79
CLN3-250ENST00000636839 NDUFS3O75489 264 aa20■□□□□ 0.79
CLN3-250ENST00000636839 CYP2A6P11509 494 aaPredicted RBP20■□□□□ 0.79
CLN3-250ENST00000636839 ADRB3P13945 408 aa20■□□□□ 0.79
CLN3-250ENST00000636839 GM2AP17900 193 aa20■□□□□ 0.79
CLN3-250ENST00000636839 SLC18A1P54219 525 aa20■□□□□ 0.79
CLN3-250ENST00000636839 GRSF1Q12849 480 aaKnown RBP eCLIP20■□□□□ 0.79
CLN3-250ENST00000636839 TERF2Q15554 542 aa20■□□□□ 0.79
CLN3-250ENST00000636839 SLC44A4Q53GD3 710 aa20■□□□□ 0.79
CLN3-250ENST00000636839 GPR153Q6NV75 609 aa20■□□□□ 0.79
CLN3-250ENST00000636839 GALNT7Q86SF2 657 aa20■□□□□ 0.79
CLN3-250ENST00000636839 SUGP1Q8IWZ8 645 aaKnown RBP20■□□□□ 0.79
CLN3-250ENST00000636839 ACMSDQ8TDX5 336 aa20■□□□□ 0.79
CLN3-250ENST00000636839 BIRC8Q96P09 236 aa20■□□□□ 0.79
CLN3-250ENST00000636839 MKRN2Q9H000 416 aaKnown RBP20■□□□□ 0.79
CLN3-250ENST00000636839 C8orf33Q9H7E9 229 aaPredicted RBP20■□□□□ 0.79
CLN3-250ENST00000636839 TMEM216Q9P0N5 145 aa20■□□□□ 0.79
CLN3-250ENST00000636839 GALPQ9UBC7 116 aa20■□□□□ 0.79
CLN3-250ENST00000636839 VWA7Q9Y334 891 aa20■□□□□ 0.79
CLN3-250ENST00000636839 SYNCRIPO60506 623 aaKnown RBP20■□□□□ 0.79
CLN3-250ENST00000636839 ZWINTO95229 277 aa20■□□□□ 0.79
CLN3-250ENST00000636839 NTSR1P30989 418 aa20■□□□□ 0.79
CLN3-250ENST00000636839 P2RY2P41231 377 aa20■□□□□ 0.79
CLN3-250ENST00000636839 CCT5P48643 541 aa20■□□□□ 0.79
CLN3-250ENST00000636839 CLCN5P51795 746 aa20■□□□□ 0.79
CLN3-250ENST00000636839 DLG1Q12959 904 aa20■□□□□ 0.79
CLN3-250ENST00000636839 TDGQ13569 410 aa20■□□□□ 0.79
CLN3-250ENST00000636839 DBN1Q16643 649 aa20■□□□□ 0.79
CLN3-250ENST00000636839 ATP13A5Q4VNC0 1218 aa20■□□□□ 0.79
CLN3-250ENST00000636839 N4BP2L1Q5TBK1 243 aaPredicted RBP20■□□□□ 0.79
CLN3-250ENST00000636839 TMEM207Q6UWW9 146 aa20■□□□□ 0.79
CLN3-250ENST00000636839 LIPIQ6XZB0 460 aa20■□□□□ 0.79
CLN3-250ENST00000636839 SERPINA9Q86WD7 417 aa20■□□□□ 0.79
CLN3-250ENST00000636839 CBARPQ8N350 705 aaPredicted RBP20■□□□□ 0.79
CLN3-250ENST00000636839 ARMC2Q8NEN0 867 aa20■□□□□ 0.79
CLN3-250ENST00000636839 GABPB2Q8TAK5 448 aaPredicted RBP20■□□□□ 0.79
CLN3-250ENST00000636839 ZNF398Q8TD17 642 aa20■□□□□ 0.79
CLN3-250ENST00000636839 DYDC1Q8WWB3 177 aa20■□□□□ 0.79
CLN3-250ENST00000636839 RSPH9Q9H1X1 276 aaPredicted RBP20■□□□□ 0.79
CLN3-250ENST00000636839 TMPRSS11EQ9UL52 423 aa20■□□□□ 0.79
CLN3-250ENST00000636839 MED16Q9Y2X0 877 aa20■□□□□ 0.79
CLN3-250ENST00000636839 A0A1W2PQF6 199 aa19.99■□□□□ 0.79
CLN3-250ENST00000636839 STMN1P16949 149 aa19.99■□□□□ 0.79
CLN3-250ENST00000636839 DRD3P35462 400 aa19.99■□□□□ 0.79
CLN3-250ENST00000636839 LIG3P49916 1009 aa19.99■□□□□ 0.79
CLN3-250ENST00000636839 COPAP53621 1224 aa19.99■□□□□ 0.79
CLN3-250ENST00000636839 RAB10P61026 200 aa19.99■□□□□ 0.79
CLN3-250ENST00000636839 ZKSCAN8Q15776 578 aaPredicted RBP19.99■□□□□ 0.79
CLN3-250ENST00000636839 ERAP2Q6P179 960 aa19.99■□□□□ 0.79
CLN3-250ENST00000636839 CENPTQ96BT3 561 aa19.99■□□□□ 0.79
CLN3-250ENST00000636839 MECRQ9BV79 373 aa19.99■□□□□ 0.79
CLN3-250ENST00000636839 IQCF5A8MTL0 148 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 LOC730098B7Z3J9 87 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 AREL1O15033 823 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 POU4F1Q01851 419 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 CST6Q15828 149 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 HHATQ5VTY9 493 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 ERN2Q76MJ5 926 aaKnown RBP19.98■□□□□ 0.79
CLN3-250ENST00000636839 SNX20Q7Z614 316 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 DSG4Q86SJ6 1040 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 CLEC14AQ86T13 490 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 CENPLQ8N0S6 344 aaPredicted RBP19.98■□□□□ 0.79
CLN3-250ENST00000636839 KCTD4Q8WVF5 259 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 FAM3CQ92520 227 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 GABRG3Q99928 467 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 C1QTNF1Q9BXJ1 281 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 IQCGQ9H095 443 aaKnown RBP19.98■□□□□ 0.79
CLN3-250ENST00000636839 INTS10Q9NVR2 710 aaKnown RBP19.98■□□□□ 0.79
CLN3-250ENST00000636839 MKS1Q9NXB0 559 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 APPL1Q9UKG1 709 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 NDRG2Q9UN36 371 aaKnown RBP19.98■□□□□ 0.79
CLN3-250ENST00000636839 TM9SF1O15321 606 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 MMP20O60882 483 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 MPOP05164 745 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 ELFN1P0C7U0 828 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 SRFP11831 508 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 ZNF30P17039 623 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 DRD1P21728 446 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 GLRBP48167 497 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 SEPT7Q16181 437 aaKnown RBP19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms