RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 DRG1Q9Y295 367 aaKnown RBP13.42□□□□□ -0.26
LINC00540-202ENST00000616974 SAR1BQ9Y6B6 198 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 CTAGE9A4FU28 777 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 CFAP69A5D8W1 941 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 PSMD11O00231 422 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 AVILO75366 819 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 PIAS2O75928 621 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 TMEM63AO94886 807 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 EPOP01588 193 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 FGF1P05230 155 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 CEACAM5P06731 702 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 JUNDP17535 347 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 GPR1P46091 355 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 ID4P47928 161 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 CDKN1CP49918 316 aaPredicted RBP13.42□□□□□ -0.26
LINC00540-202ENST00000616974 CCT8P50990 548 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 ETF1P62495 437 aaKnown RBP13.42□□□□□ -0.26
LINC00540-202ENST00000616974 BASP1P80723 227 aaKnown RBP13.42□□□□□ -0.26
LINC00540-202ENST00000616974 DNAJC3Q13217 504 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 NFATC4Q14934 902 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 ATP13A5Q4VNC0 1218 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 PRRT3Q5FWE3 981 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 NAXDQ8IW45 347 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 EID2Q8N6I1 236 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 ZNF548Q8NEK5 533 aaPredicted RBP13.42□□□□□ -0.26
LINC00540-202ENST00000616974 OR4K2Q8NGD2 314 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 TEX101Q9BY14 249 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 ZDHHC5Q9C0B5 715 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 HAUS2Q9NVX0 235 aa13.42□□□□□ -0.26
LINC00540-202ENST00000616974 LDB2O43679 373 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 CSF2P04141 144 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 NME1P15531 152 aaKnown RBP13.41□□□□□ -0.26
LINC00540-202ENST00000616974 HLA-DPA1P20036 260 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 HMGCLP35914 325 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 ARHGAP8P85298 464 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 OVGP1Q12889 678 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 SEMA5AQ13591 1074 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 DEFB133Q30KQ1 61 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 MACC1Q6ZN28 852 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 DBX2Q6ZNG2 339 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 KLHL7Q8IXQ5 586 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 TMEM168Q9H0V1 697 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 FAM83DQ9H4H8 585 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 CYP4F12Q9HCS2 524 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 SLC2A6Q9UGQ3 507 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 FKBPLQ9UIM3 349 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 MOSPD1Q9UJG1 213 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 PCOLCE2Q9UKZ9 415 aa13.41□□□□□ -0.26
LINC00540-202ENST00000616974 AAR2Q9Y312 384 aaKnown RBP13.41□□□□□ -0.26
LINC00540-202ENST00000616974 PHF2O75151 1096 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 KRT14P02533 472 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 TSHRP16473 764 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 ARSDP51689 593 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 DPTQ07507 201 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 GPS1Q13098 491 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 MARCH9Q86YJ5 346 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 PHACTR4Q8IZ21 702 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 AGGF1Q8N302 714 aaeCLIP13.4□□□□□ -0.263e-6■■■■□ 22.7
LINC00540-202ENST00000616974 DNAJC1Q96KC8 554 aaKnown RBP13.4□□□□□ -0.26
LINC00540-202ENST00000616974 SPATA16Q9BXB7 569 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 C1QTNF7Q9BXJ2 289 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 FAM96AQ9H5X1 160 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 TOR4AQ9NXH8 423 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 APOBEC3BQ9UH17 382 aaKnown RBP13.4□□□□□ -0.26
LINC00540-202ENST00000616974 TPX2Q9ULW0 747 aaKnown RBP13.4□□□□□ -0.26
LINC00540-202ENST00000616974 ZKSCAN5Q9Y2L8 839 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 USP24Q9UPU5 2620 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 COL27A1Q8IZC6 1860 aaPredicted RBP13.4□□□□□ -0.26
LINC00540-202ENST00000616974 OR51F1A6NGY5 319 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 GOLGA8MH3BSY2 632 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 KCNK5O95279 499 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 F7P08709 466 aaPredicted RBP13.4□□□□□ -0.26
LINC00540-202ENST00000616974 TCP1P17987 556 aaKnown RBP13.4□□□□□ -0.26
LINC00540-202ENST00000616974 AK4P27144 223 aaPredicted RBP13.4□□□□□ -0.26
LINC00540-202ENST00000616974 RXRGP48443 463 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 NOVA1P51513 510 aaKnown RBP13.4□□□□□ -0.26
LINC00540-202ENST00000616974 HK3P52790 923 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 SRP54P61011 504 aaKnown RBP13.4□□□□□ -0.26
LINC00540-202ENST00000616974 CHRNA6Q15825 494 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 IL27RAQ6UWB1 636 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 SPNS2Q8IVW8 549 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 NDUFAF2Q8N183 169 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 BAHD1Q8TBE0 780 aaPredicted RBP13.4□□□□□ -0.26
LINC00540-202ENST00000616974 LMX1AQ8TE12 382 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 RHBDD1Q8TEB9 315 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 PWWP2AQ96N64 755 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 FERMT1Q9BQL6 677 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 TRIM51Q9BSJ1 452 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 FRMD8P1Q9BZ68 369 aaPredicted RBP13.4□□□□□ -0.26
LINC00540-202ENST00000616974 ERVMER34-1Q9H9K5 563 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 ARNT2Q9HBZ2 717 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.4□□□□□ -0.26
LINC00540-202ENST00000616974 SUFUQ9UMX1 484 aa13.4□□□□□ -0.26
LINC00540-202ENST00000616974 MGAQ8IWI9 3026 aa13.4□□□□□ -0.27
LINC00540-202ENST00000616974 LY6G6EA0A0G2JKS1 128 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 MYCLP1P12525 358 aaPredicted RBP13.39□□□□□ -0.27
LINC00540-202ENST00000616974 PTGIRP43119 386 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 ARRB1P49407 418 aaPredicted RBP13.39□□□□□ -0.27
LINC00540-202ENST00000616974 ZNF140P52738 457 aaPredicted RBP13.39□□□□□ -0.27
LINC00540-202ENST00000616974 YPEL5P62699 121 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms