RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 RAVER1Q8IY67 606 aaKnown RBP7.58□□□□□ -1.2
CUX1-219ENST00000606749 EXD1Q8NHP7 514 aa7.58□□□□□ -1.2
CUX1-219ENST00000606749 PATE1Q8WXA2 126 aa7.58□□□□□ -1.2
CUX1-219ENST00000606749 RAPGEF5Q92565 580 aa7.58□□□□□ -1.2
CUX1-219ENST00000606749 COX14Q96I36 57 aa7.58□□□□□ -1.2
CUX1-219ENST00000606749 WDR24Q96S15 920 aa7.58□□□□□ -1.2
CUX1-219ENST00000606749 LYSMD1Q96S90 227 aa7.58□□□□□ -1.2
CUX1-219ENST00000606749 NUDT22Q9BRQ3 303 aa7.58□□□□□ -1.2
CUX1-219ENST00000606749 ZNF670Q9BS34 389 aa7.58□□□□□ -1.2
CUX1-219ENST00000606749 RIOK2Q9BVS4 552 aaKnown RBP7.58□□□□□ -1.2
CUX1-219ENST00000606749 TDRD1Q9BXT4 1180 aaKnown RBP7.58□□□□□ -1.2
CUX1-219ENST00000606749 PACSIN1Q9BY11 444 aa7.58□□□□□ -1.2
CUX1-219ENST00000606749 B3GNT4Q9C0J1 378 aa7.58□□□□□ -1.2
CUX1-219ENST00000606749 PCDH9Q9HC56 1237 aa7.58□□□□□ -1.2
CUX1-219ENST00000606749 HAUS2Q9NVX0 235 aa7.58□□□□□ -1.2
CUX1-219ENST00000606749 CNOT6Q9ULM6 557 aaKnown RBP7.58□□□□□ -1.2
CUX1-219ENST00000606749 RPL26L1Q9UNX3 145 aaKnown RBP7.58□□□□□ -1.2
CUX1-219ENST00000606749 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.58□□□□□ -1.28e-7■□□□□ 10.1
CUX1-219ENST00000606749 TRBV23OR9-2A0A075B6M9 112 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 IGHV1OR21-1A0A087WYE8 117 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 IGHV5-10-1A0A0J9YXX1 117 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 ANKRD66B4E2M5 251 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 C9orf172C9J069 976 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 INPP4BO15327 924 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 DNAJC6O75061 913 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 JCHAINP01591 159 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 HLA-DQB2P05538 268 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 PYGLP06737 847 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 LIPCP11150 499 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 FGF3P11487 239 aaPredicted RBP7.57□□□□□ -1.2
CUX1-219ENST00000606749 CCL4P13236 92 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 MX2P20592 715 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 CA4P22748 312 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 KDELR1P24390 212 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 ACTR1BP42025 376 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 SPINT3P49223 89 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 LIMK2P53671 638 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 MAPK10P53779 464 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 ACTR1AP61163 376 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 PPIDQ08752 370 aaKnown RBP7.57□□□□□ -1.2
CUX1-219ENST00000606749 BIRC2Q13490 618 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 MESDQ14696 234 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 QPCTQ16769 361 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 MARK2Q7KZI7 788 aaKnown RBP7.57□□□□□ -1.2
CUX1-219ENST00000606749 ZFAND4Q86XD8 727 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 DTX1Q86Y01 620 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 CCDC13Q8IYE1 715 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 CNTD1Q8N815 330 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 CCNYQ8ND76 341 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 RCBTB1Q8NDN9 531 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 LPCAT1Q8NF37 534 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 OR4D9Q8NGE8 314 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 OR8K1Q8NGG5 319 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 SLC35G2Q8TBE7 412 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 CTNNBL1Q8WYA6 563 aaPredicted RBP7.57□□□□□ -1.2
CUX1-219ENST00000606749 HDAC11Q96DB2 347 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 SGF29Q96ES7 293 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 MED8Q96G25 268 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 RNF157Q96PX1 679 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 OR2M4Q96R27 311 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 MLPHQ9BV36 600 aaPredicted RBP7.57□□□□□ -1.2
CUX1-219ENST00000606749 XPO4Q9C0E2 1151 aaKnown RBP7.57□□□□□ -1.2
CUX1-219ENST00000606749 CDH19Q9H159 772 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 WDR70Q9NW82 654 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 DTLQ9NZJ0 730 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 FOXJ2Q9P0K8 574 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 AKAP7Q9P0M2 348 aaPredicted RBP7.57□□□□□ -1.2
CUX1-219ENST00000606749 SEPT10Q9P0V9 454 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 ZNHIT2Q9UHR6 403 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 LCMT1Q9UIC8 334 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 DNPEPQ9ULA0 475 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 TTLL3Q9Y4R7 772 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 PCYT1BQ9Y5K3 369 aaPredicted RBP7.57□□□□□ -1.2
CUX1-219ENST00000606749 SCN8AQ9UQD0 1980 aa7.57□□□□□ -1.2
CUX1-219ENST00000606749 C1orf232A0A0U1RR37 186 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 SSU72P8A0A1W2PR75 194 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 RGSL1A5PLK6 1076 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 C3orf70A6NLC5 250 aaPredicted RBP7.56□□□□□ -1.2
CUX1-219ENST00000606749 ZNF487B1APH4 448 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 B8ZZF3 427 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 KCNK1O00180 336 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 HGSO14964 777 aaPredicted RBP7.56□□□□□ -1.2
CUX1-219ENST00000606749 ZIC2O95409 532 aaPredicted RBP7.56□□□□□ -1.2
CUX1-219ENST00000606749 ASMTLO95671 621 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 EML2O95834 649 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 ATP1A1P05023 1023 aaKnown RBP7.56□□□□□ -1.2
CUX1-219ENST00000606749 TMEM253P0C7T8 217 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 MPSTP25325 297 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 CD82P27701 267 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 MAN1A1P33908 653 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 CD86P42081 329 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 ARHGAP25P42331 645 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 FASLGP48023 281 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 ARSDP51689 593 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 TRA2AQ13595 282 aaKnown RBP eCLIP7.56□□□□□ -1.2
CUX1-219ENST00000606749 LRP8Q14114 963 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 LINC00303Q3SY05 128 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 MANEAQ5SRI9 462 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 FAM182AQ5T1J6 154 aa7.56□□□□□ -1.2
CUX1-219ENST00000606749 ZFYVE27Q5T4F4 411 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms