RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 DDX47Q9H0S4 455 aaKnown RBP14.13□□□□□ -0.15
SHKBP1-217ENST00000598558 TRABDQ9H4I3 376 aa14.13□□□□□ -0.15
SHKBP1-217ENST00000598558 ST14Q9Y5Y6 855 aa14.13□□□□□ -0.15
SHKBP1-217ENST00000598558 SPAARA0A1B0GVQ0 90 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 CACNB4O00305 520 aaPredicted RBP14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 CCL22O00626 93 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 PSMD3O43242 534 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 UGT1A9O60656 530 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 MYCLP1P12525 358 aaPredicted RBP14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 MYF5P13349 255 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 UGT1A6P19224 532 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 CSRP1P21291 193 aaKnown RBP14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 SDHBP21912 280 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 UGT1A1P22309 533 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 UGT1A4P22310 534 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 UGT1A3P35503 534 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 UGT1A5P35504 534 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 PTGIRP43119 386 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 HK3P52790 923 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 DCDC1P59894 354 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 XIAPP98170 497 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 PPARDQ03181 441 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 TAF1AQ15573 450 aaPredicted RBP14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 CHRNA6Q15825 494 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 KHDC1Q4VXA5 237 aaKnown RBP14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 ANKRD22Q5VYY1 191 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 ZNF548Q8NEK5 533 aaPredicted RBP14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 OR4K2Q8NGD2 314 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 CCL4L1Q8NHW4 92 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 HIC2Q96JB3 615 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 PPP1R2P1Q96PQ5 205 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 SRPK1Q96SB4 655 aaKnown RBP14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 NAP1L3Q99457 506 aaPredicted RBP14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 LRRC61Q9BV99 259 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 SPATA16Q9BXB7 569 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 UGT1A7Q9HAW7 530 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 UGT1A10Q9HAW8 530 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 UGT1A8Q9HAW9 530 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 CASS4Q9NQ75 786 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 PHPT1Q9NRX4 125 aaPredicted RBP14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 HACD3Q9P035 362 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 NFKBIL1Q9UBC1 381 aaPredicted RBP14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 KLQ9UEF7 1012 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 PLEKHM1Q9Y4G2 1056 aa14.12□□□□□ -0.15
SHKBP1-217ENST00000598558 DCHS1Q96JQ0 3298 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 TNFRSF10CO14798 259 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 FLRT2O43155 660 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 APRTP07741 180 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 CASQ1P31415 396 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 NOVA1P51513 510 aaKnown RBP14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 ZNF140P52738 457 aaPredicted RBP14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 HNRNPKP61978 463 aaKnown RBP eCLIP14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 TMPRSS15P98073 1019 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 GPS1Q13098 491 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 POU6F1Q14863 301 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 SUZ12Q15022 739 aaKnown RBP14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 ATP13A5Q4VNC0 1218 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 CCDC38Q502W7 563 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 PRRT3Q5FWE3 981 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 PSAPL1Q6NUJ1 521 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 DOK6Q6PKX4 331 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 ZNF534Q76KX8 674 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 SFTPA2Q8IWL1 248 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 TRAM1L1Q8N609 369 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 LMX1AQ8TE12 382 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 TMEM131Q92545 1883 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 SCARF2Q96GP6 870 aaPredicted RBP14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 TMEM168Q9H0V1 697 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 SUDS3Q9H7L9 328 aaPredicted RBP14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 CYP4F12Q9HCS2 524 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 APOBEC3BQ9UH17 382 aaKnown RBP14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 FKBPLQ9UIM3 349 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 SLC17A4Q9Y2C5 497 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 DGKBQ9Y6T7 804 aa14.11□□□□□ -0.15
SHKBP1-217ENST00000598558 ASCC3Q8N3C0 2202 aaKnown RBP14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 LY6G6EA0A0G2JKS1 128 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 PRSS38A1L453 326 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 CCDC78A2IDD5 438 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 ERI2A8K979 691 aaKnown RBP14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 YY2O15391 372 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 STX7O15400 261 aaKnown RBP14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 YKT6O15498 198 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 FFAR2O15552 330 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 AQP9O43315 295 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 SIGLEC6O43699 453 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 MTX2O75431 263 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 RASGRP1O95267 797 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 LPOP22079 712 aaPredicted RBP14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 HTR1BP28222 390 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 ACTN2P35609 894 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 TNNT3P45378 269 aaPredicted RBP14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 FNTAP49354 379 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 BASP1P80723 227 aaKnown RBP14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 PEX6Q13608 980 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 KCNJ11Q14654 390 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 DEFB133Q30KQ1 61 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 HS1BP3Q53T59 392 aa14.1□□□□□ -0.15
SHKBP1-217ENST00000598558 PPM1JQ5JR12 505 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms