RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 BBS5Q8N3I7 341 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 OR6C4Q8NGE1 309 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 UBE2Q2Q8WVN8 375 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 PATE1Q8WXA2 126 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 USP7Q93009 1102 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 FATE1Q969F0 183 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 NUS1Q96E22 293 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 PDLIM2Q96JY6 352 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 TSGA13Q96PP4 275 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 PSKH2Q96QS6 385 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 CARS2Q9HA77 564 aaKnown RBP12.47□□□□□ -0.41
UPF1-203ENST00000594504 RDH14Q9HBH5 336 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 NOD2Q9HC29 1040 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 GUCA1BQ9UMX6 200 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 PLEKHM1Q9Y4G2 1056 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 PCDHGA7Q9Y5G6 932 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 ST14Q9Y5Y6 855 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 UNC13CQ8NB66 2214 aa12.47□□□□□ -0.41
UPF1-203ENST00000594504 FASNP49327 2511 aaKnown RBP12.47□□□□□ -0.41
UPF1-203ENST00000594504 IGSF10Q6WRI0 2623 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 ARHGEF17Q96PE2 2063 aaPredicted RBP12.46□□□□□ -0.41
UPF1-203ENST00000594504 hCG_1818297A0A087WSY0 165 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 PRAMEF33A0A0G2JMD5 474 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.46□□□□□ -0.41
UPF1-203ENST00000594504 MIF4GDA9UHW6 222 aaKnown RBP12.46□□□□□ -0.41
UPF1-203ENST00000594504 B8ZZF3 427 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 TMX2-CTNND1H3BSU7 103 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 J3QKU1 62 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 MATN3O15232 486 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 HTRA2O43464 458 aaPredicted RBP12.46□□□□□ -0.41
UPF1-203ENST00000594504 PRAMEF10O60809 474 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 MAP3K6O95382 1288 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 PTMAP06454 111 aaKnown RBP12.46□□□□□ -0.41
UPF1-203ENST00000594504 CEACAM5P06731 702 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 CCNB1P14635 433 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 CTPS1P17812 591 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 LHCGRP22888 699 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 KELP23276 732 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 CCNCP24863 283 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 ALDH4A1P30038 563 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 MLLT3P42568 568 aaPredicted RBP12.46□□□□□ -0.41
UPF1-203ENST00000594504 RWDD2BP57060 319 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 AP1S1P61966 158 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 DYNLT1P63172 113 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 SLC10A2Q12908 348 aaPredicted RBP12.46□□□□□ -0.41
UPF1-203ENST00000594504 EIF3IQ13347 325 aaKnown RBP12.46□□□□□ -0.41
UPF1-203ENST00000594504 AMZ1Q400G9 498 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 MARC1Q5VT66 337 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 Q6ZVL8 140 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 TSPAN33Q86UF1 283 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 HEATR4Q86WZ0 1026 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 CBARPQ8N350 705 aaPredicted RBP12.46□□□□□ -0.41
UPF1-203ENST00000594504 UBL4BQ8N7F7 174 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 EXD3Q8N9H8 876 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 GPBAR1Q8TDU6 330 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 ZDHHC1Q8WTX9 485 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 MAML1Q92585 1016 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 HDAC11Q96DB2 347 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 NUDCD1Q96RS6 583 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 WDR26Q9H7D7 661 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 FOXJ2Q9P0K8 574 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 HEY1Q9Y5J3 304 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 CAPN6Q9Y6Q1 641 aa12.46□□□□□ -0.41
UPF1-203ENST00000594504 GOLGA6CA6NDK9 693 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 GOLGA6BA6NDN3 693 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 NPIPB15A6NHN6 443 aaPredicted RBP12.45□□□□□ -0.42
UPF1-203ENST00000594504 CST8O60676 142 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 HEXIM1O94992 359 aaKnown RBP12.45□□□□□ -0.42
UPF1-203ENST00000594504 ECEL1O95672 775 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 FTCDO95954 541 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 CPP00450 1065 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 PDHA1P08559 390 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 GOLGA6DP0CG33 693 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 MYCLP1P12525 358 aaPredicted RBP12.45□□□□□ -0.42
UPF1-203ENST00000594504 CCL4P13236 92 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 PNLIPP16233 465 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 VIPR1P32241 457 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 PTPN7P35236 360 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 CETN2P41208 172 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 MMP13P45452 471 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 GNPDA1P46926 289 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 NR2C2P49116 596 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 PPIDQ08752 370 aaKnown RBP12.45□□□□□ -0.42
UPF1-203ENST00000594504 C16orf72Q14CZ0 275 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 PDK1Q15118 436 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 PHF19Q5T6S3 580 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 KAZNQ674X7 775 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 ZNF574Q6ZN55 896 aaPredicted RBP12.45□□□□□ -0.42
UPF1-203ENST00000594504 BZW1Q7L1Q6 419 aaKnown RBP12.45□□□□□ -0.42
UPF1-203ENST00000594504 VASH2Q86V25 355 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 SLITRK4Q8IW52 837 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.45□□□□□ -0.42
UPF1-203ENST00000594504 TEX26Q8N6G2 289 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 CCNYQ8ND76 341 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 RCBTB1Q8NDN9 531 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 LRRN4Q8WUT4 740 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 ALG3Q92685 438 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 MED8Q96G25 268 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 OLFM3Q96PB7 478 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 MGME1Q9BQP7 344 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms