RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 EPHB1P54762 984 aa23.78■■□□□ 1.4
LSM4-202ENST00000593564 IHHQ14623 411 aa23.78■■□□□ 1.4
LSM4-202ENST00000593564 IQCB1Q15051 598 aa23.78■■□□□ 1.4
LSM4-202ENST00000593564 PAFAH1B3Q15102 231 aaKnown RBP23.78■■□□□ 1.4
LSM4-202ENST00000593564 CCDC122Q5T0U0 273 aa23.78■■□□□ 1.4
LSM4-202ENST00000593564 NCBP2-AS2Q69YL0 99 aa23.78■■□□□ 1.4
LSM4-202ENST00000593564 TIGD7Q6NT04 549 aaPredicted RBP23.78■■□□□ 1.4
LSM4-202ENST00000593564 GALNT13Q8IUC8 556 aa23.78■■□□□ 1.4
LSM4-202ENST00000593564 RAVER1Q8IY67 606 aaKnown RBP23.78■■□□□ 1.4
LSM4-202ENST00000593564 NRSN1Q8IZ57 195 aa23.78■■□□□ 1.4
LSM4-202ENST00000593564 AGBL5Q8NDL9 886 aa23.78■■□□□ 1.4
LSM4-202ENST00000593564 AGAP2Q99490 1192 aa23.78■■□□□ 1.4
LSM4-202ENST00000593564 TDRD1Q9BXT4 1180 aaKnown RBP23.78■■□□□ 1.4
LSM4-202ENST00000593564 STARD5Q9NSY2 213 aa23.78■■□□□ 1.4
LSM4-202ENST00000593564 KCNK4Q9NYG8 393 aa23.78■■□□□ 1.4
LSM4-202ENST00000593564 MATN3O15232 486 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 SERPING1P05155 500 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 SFTPCP11686 197 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 GPLD1P80108 840 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 DSC2Q02487 901 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 DPYSL3Q14195 570 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 TBR1Q16650 682 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 HADHQ16836 314 aaKnown RBP23.77■■□□□ 1.4
LSM4-202ENST00000593564 MARK2Q7KZI7 788 aaKnown RBP23.77■■□□□ 1.4
LSM4-202ENST00000593564 PRICKLE2Q7Z3G6 844 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 CCDC112Q8NEF3 446 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 EXD1Q8NHP7 514 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 HTR3CQ8WXA8 447 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 TSGA13Q96PP4 275 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 RIOK2Q9BVS4 552 aaKnown RBP23.77■■□□□ 1.4
LSM4-202ENST00000593564 DDA1Q9BW61 102 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 FAM117AQ9C073 453 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 CLMPQ9H6B4 373 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 HAUS2Q9NVX0 235 aa23.77■■□□□ 1.4
LSM4-202ENST00000593564 HEMK1Q9Y5R4 338 aaPredicted RBP23.77■■□□□ 1.4
LSM4-202ENST00000593564 A0A087X0T9 212 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 PYCARD-AS1I3L0S3 204 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 FAM87AP0C7U9 286 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 FAM228BP0C875 321 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 ITGB6P18564 788 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 CCNCP24863 283 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 CSTF2P33240 577 aaKnown RBP eCLIP23.76■■□□□ 1.39
LSM4-202ENST00000593564 PBX1P40424 430 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 SSR1P43307 286 aaKnown RBP23.76■■□□□ 1.39
LSM4-202ENST00000593564 ATP1A2P50993 1020 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 RPL26P61254 145 aaKnown RBP23.76■■□□□ 1.39
LSM4-202ENST00000593564 IFI16Q16666 785 aaKnown RBP23.76■■□□□ 1.39
LSM4-202ENST00000593564 SFRP1Q8N474 314 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 ARRDC2Q8TBH0 407 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 PMEPA1Q969W9 287 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 ZNF670Q9BS34 389 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 RBM22Q9NW64 420 aaKnown RBP eCLIP23.76■■□□□ 1.39
LSM4-202ENST00000593564 PDP2Q9P2J9 529 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 RPL26L1Q9UNX3 145 aaKnown RBP23.76■■□□□ 1.39
LSM4-202ENST00000593564 CHKBQ9Y259 395 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 SDK2Q58EX2 2172 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 BSNQ9UPA5 3926 aa23.76■■□□□ 1.39
LSM4-202ENST00000593564 WISP1O95388 367 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 PRLP01236 227 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 CA4P22748 312 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 CYP4F2P78329 520 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 ZBED6P86452 979 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 KCNC4Q03721 635 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 TMEM71Q6P5X7 295 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 SLC37A2Q8TED4 501 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 JPH3Q8WXH2 748 aaPredicted RBP23.75■■□□□ 1.39
LSM4-202ENST00000593564 NKD1Q969G9 470 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 LYSMD1Q96S90 227 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 FUCA2Q9BTY2 467 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 TMEM9Q9P0T7 183 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 VPS18Q9P253 973 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 TTLL3Q9Y4R7 772 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 B3GALT1Q9Y5Z6 326 aa23.75■■□□□ 1.39
LSM4-202ENST00000593564 B4E171 279 aa23.74■■□□□ 1.39
LSM4-202ENST00000593564 INPP4BO15327 924 aa23.74■■□□□ 1.39
LSM4-202ENST00000593564 MPSTP25325 297 aa23.74■■□□□ 1.39
LSM4-202ENST00000593564 TSPAN7P41732 249 aa23.74■■□□□ 1.39
LSM4-202ENST00000593564 ATP13A4Q4VNC1 1196 aa23.74■■□□□ 1.39
LSM4-202ENST00000593564 ANKRD20A8PQ5CZ79 823 aa23.74■■□□□ 1.39
LSM4-202ENST00000593564 CHCHD2P9Q5T1J5 151 aaPredicted RBP23.74■■□□□ 1.39
LSM4-202ENST00000593564 CAVIN1Q6NZI2 390 aaKnown RBP23.74■■□□□ 1.39
LSM4-202ENST00000593564 ALKBH5Q6P6C2 394 aaKnown RBP23.74■■□□□ 1.39
LSM4-202ENST00000593564 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP23.74■■□□□ 1.39
LSM4-202ENST00000593564 ART4Q93070 314 aa23.74■■□□□ 1.39
LSM4-202ENST00000593564 SLC38A3Q99624 504 aa23.74■■□□□ 1.39
LSM4-202ENST00000593564 ASPSCR1Q9BZE9 553 aa23.74■■□□□ 1.39
LSM4-202ENST00000593564 DNAJC6O75061 913 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 MAP3K6O95382 1288 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 CLDN7O95471 211 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 ASMTLO95671 621 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 EML2O95834 649 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 UGT1A3P35503 534 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 FANCCQ00597 558 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 NIPAL4Q0D2K0 466 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 PDK2Q15119 407 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 NFKBIBQ15653 356 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 KCTD6Q8NC69 237 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 LPCAT1Q8NF37 534 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 OR10G6Q8NH81 332 aa23.73■■□□□ 1.39
LSM4-202ENST00000593564 ZNF564Q8TBZ8 553 aaPredicted RBP23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms