RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TMEM110Q86TL2 294 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 BPHLQ86WA6 291 aaPredicted RBP16.04■□□□□ 0.16
VPS53-218ENST00000575207 BCORP1Q8N888 145 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 ENDOVQ8N8Q3 282 aaKnown RBP16.04■□□□□ 0.16
VPS53-218ENST00000575207 MR1Q95460 341 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 TMEM121Q9BTD3 319 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 NLNQ9BYT8 704 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 CHST8Q9H2A9 424 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 OGFRQ9NZT2 677 aa16.04■□□□□ 0.16
VPS53-218ENST00000575207 PVALEFA0A1B0GWK0 134 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 MASP2O00187 686 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 WIPF1O43516 503 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 NELFEP18615 380 aaKnown RBP16.03■□□□□ 0.16
VPS53-218ENST00000575207 BRD2P25440 801 aaKnown RBP16.03■□□□□ 0.16
VPS53-218ENST00000575207 CASP1P29466 404 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 ETFBP38117 255 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 POLD2P49005 469 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 ADAM8P78325 824 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 FOLH1Q04609 750 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 CDC16Q13042 620 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 LONRF1Q17RB8 773 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.03■□□□□ 0.16
VPS53-218ENST00000575207 IYDQ6PHW0 289 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 TMEM270Q6UE05 265 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 MEX3BQ6ZN04 569 aaKnown RBP16.03■□□□□ 0.16
VPS53-218ENST00000575207 DNAJB8Q8NHS0 232 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 TGM7Q96PF1 710 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 OR2M4Q96R27 311 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 TKTL2Q9H0I9 626 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 BLZF1Q9H2G9 400 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 WASH6PQ9NQA3 447 aa16.03■□□□□ 0.16
VPS53-218ENST00000575207 E5RJQ4 531 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 CPNE3O75131 537 aaKnown RBP16.02■□□□□ 0.16
VPS53-218ENST00000575207 IGSF6O95976 241 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 HEXAP06865 529 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 GLI1P08151 1106 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 PDIA4P13667 645 aaKnown RBP16.02■□□□□ 0.16
VPS53-218ENST00000575207 SMSP52788 366 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 CDK3Q00526 305 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 GPS2Q13227 327 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 TUBB3Q13509 450 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 ACBD5Q5T8D3 534 aaPredicted RBP16.02■□□□□ 0.16
VPS53-218ENST00000575207 AFMIDQ63HM1 303 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 BRAT1Q6PJG6 821 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 SLC9B2Q86UD5 537 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 CLEC1AQ8NC01 280 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 NRGNQ92686 78 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 DHX58Q96C10 678 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 FER1L6-AS2Q96M78 137 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 SUV39H2Q9H5I1 410 aa16.02■□□□□ 0.16
VPS53-218ENST00000575207 SEC16AO15027 2179 aa16.02■□□□□ 0.15
VPS53-218ENST00000575207 RNF225M0QZC1 329 aaPredicted RBP16.01■□□□□ 0.15
VPS53-218ENST00000575207 CREB3O43889 395 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 RASSF9O75901 435 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 PIGNO95427 931 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 ELFN1P0C7U0 828 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 MEOX1P50221 254 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 YBX1P67809 324 aaKnown RBP16.01■□□□□ 0.15
VPS53-218ENST00000575207 LRP8Q14114 963 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 ZNF169Q14929 603 aaPredicted RBP16.01■□□□□ 0.15
VPS53-218ENST00000575207 BRMS1LQ5PSV4 323 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 RPUSD3Q6P087 351 aaKnown RBP16.01■□□□□ 0.15
VPS53-218ENST00000575207 CLEC9AQ6UXN8 241 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 ZSWIM9Q86XI8 627 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 KIAA0895Q8NCT3 520 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 C18orf12Q96KH6 178 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 LRFN5Q96NI6 719 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 WDCPQ9H6R7 721 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 ASNSD1Q9NWL6 643 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 TRAF3IP3Q9Y228 551 aa16.01■□□□□ 0.15
VPS53-218ENST00000575207 INSIG1O15503 277 aa16■□□□□ 0.15
VPS53-218ENST00000575207 CALUO43852 315 aaPredicted RBP16■□□□□ 0.15
VPS53-218ENST00000575207 KIF1CO43896 1103 aaKnown RBP16■□□□□ 0.15
VPS53-218ENST00000575207 TMCC1O94876 653 aa16■□□□□ 0.15
VPS53-218ENST00000575207 NR2F2P24468 414 aa16■□□□□ 0.15
VPS53-218ENST00000575207 ARCN1P48444 511 aaKnown RBP16■□□□□ 0.15
VPS53-218ENST00000575207 CXCR3P49682 368 aa16■□□□□ 0.15
VPS53-218ENST00000575207 CEBPZQ03701 1054 aaKnown RBP16■□□□□ 0.15
VPS53-218ENST00000575207 STK4Q13043 487 aa16■□□□□ 0.15
VPS53-218ENST00000575207 HIF1AQ16665 826 aa16■□□□□ 0.15
VPS53-218ENST00000575207 PYCR3Q53H96 274 aa16■□□□□ 0.15
VPS53-218ENST00000575207 IGFL2Q6UWQ7 119 aa16■□□□□ 0.15
VPS53-218ENST00000575207 TMEM207Q6UWW9 146 aa16■□□□□ 0.15
VPS53-218ENST00000575207 LEKR1Q6ZMV7 388 aa16■□□□□ 0.15
VPS53-218ENST00000575207 SPOCD1Q6ZMY3 1216 aa16■□□□□ 0.15
VPS53-218ENST00000575207 RAB43Q86YS6 212 aa16■□□□□ 0.15
VPS53-218ENST00000575207 DRC7Q8IY82 874 aa16■□□□□ 0.15
VPS53-218ENST00000575207 DNAJB14Q8TBM8 379 aa16■□□□□ 0.15
VPS53-218ENST00000575207 IP6K3Q96PC2 410 aa16■□□□□ 0.15
VPS53-218ENST00000575207 ZYG11BQ9C0D3 744 aa16■□□□□ 0.15
VPS53-218ENST00000575207 UCK1Q9HA47 277 aa16■□□□□ 0.15
VPS53-218ENST00000575207 PIGVQ9NUD9 493 aa16■□□□□ 0.15
VPS53-218ENST00000575207 COQ4Q9Y3A0 265 aa16■□□□□ 0.15
VPS53-218ENST00000575207 CALCAP01258 141 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 KLK3P07288 261 aaPredicted RBP15.99■□□□□ 0.15
VPS53-218ENST00000575207 CAPN1P07384 714 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 FOLR1P15328 257 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 TBXAS1P24557 533 aaPredicted RBP15.99■□□□□ 0.15
VPS53-218ENST00000575207 TEAD1P28347 426 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 NFIL3Q16649 462 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms