RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ATG14Q6ZNE5 492 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 FAM71BQ8TC56 605 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 ART4Q93070 314 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 COX14Q96I36 57 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 NAP1L5Q96NT1 182 aaPredicted RBP20.95■□□□□ 0.94
VPS53-216ENST00000574029 AGAP2Q99490 1192 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 TRIM4Q9C037 500 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 POLR1EQ9GZS1 481 aaKnown RBP20.95■□□□□ 0.94
VPS53-216ENST00000574029 GEMIN8Q9NWZ8 242 aaKnown RBP20.95■□□□□ 0.94
VPS53-216ENST00000574029 PDP2Q9P2J9 529 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 RCOR3Q9P2K3 495 aaPredicted RBP20.95■□□□□ 0.94
VPS53-216ENST00000574029 A0A1B0GTH6 734 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 SMTNL1A8MU46 457 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 B4E171 279 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 UGT1A3P35503 534 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 TSPAN7P41732 249 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 STC1P52823 247 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 IHHQ14623 411 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 TRIM74Q86UV6 250 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 RAVER1Q8IY67 606 aaKnown RBP20.94■□□□□ 0.94
VPS53-216ENST00000574029 NRSN1Q8IZ57 195 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 SLC37A2Q8TED4 501 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 MAML1Q92585 1016 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 OCIAD1Q9NX40 245 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 SLC39A1Q9NY26 324 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 IP6K2Q9UHH9 426 aa20.94■□□□□ 0.94
VPS53-216ENST00000574029 ARHGAP6O43182 974 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 PPFIA2O75334 1257 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 LIFP15018 202 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 ITKQ08881 620 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 MMRN1Q13201 1228 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 FIGNQ5HY92 759 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.93■□□□□ 0.94
VPS53-216ENST00000574029 HGSNATQ68CP4 663 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 MARK2Q7KZI7 788 aaKnown RBP20.93■□□□□ 0.94
VPS53-216ENST00000574029 GALNT13Q8IUC8 556 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 SFRP1Q8N474 314 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 IL22RA1Q8N6P7 574 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 BMPERQ8N8U9 685 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 EXD1Q8NHP7 514 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 BTBD6Q96KE9 485 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 ASPSCR1Q9BZE9 553 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 THAP2Q9H0W7 228 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 SLC25A18Q9H1K4 315 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 ADNPQ9H2P0 1102 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 DNPEPQ9ULA0 475 aa20.93■□□□□ 0.94
VPS53-216ENST00000574029 NAV2Q8IVL1 2488 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 CYSRT1A8MQ03 144 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 MFSD11O43934 449 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 DNAJC6O75061 913 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 EML2O95834 649 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 CES1P23141 567 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 GARSP41250 739 aaKnown RBP20.92■□□□□ 0.94
VPS53-216ENST00000574029 GALNT2Q10471 571 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 KRT81Q14533 505 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 DCAF12Q5T6F0 453 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 ZNF761Q86XN6 746 aaPredicted RBP20.92■□□□□ 0.94
VPS53-216ENST00000574029 OR10G6Q8NH81 332 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 SLC38A3Q99624 504 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 RIOK2Q9BVS4 552 aaKnown RBP20.92■□□□□ 0.94
VPS53-216ENST00000574029 TDRD1Q9BXT4 1180 aaKnown RBP20.92■□□□□ 0.94
VPS53-216ENST00000574029 VPS18Q9P253 973 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 ANAPC7Q9UJX3 599 aa20.92■□□□□ 0.94
VPS53-216ENST00000574029 TRBV23OR9-2A0A075B6M9 112 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 EFCAB7A8K855 629 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 MATN3O15232 486 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 INPP4BO15327 924 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 PRLP01236 227 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 CD48P09326 243 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 ARSEP51690 589 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 EPHB1P54762 984 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 RAB15P59190 212 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 DSC2Q02487 901 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 NR1I3Q14994 352 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 PAFAH1B3Q15102 231 aaKnown RBP20.91■□□□□ 0.94
VPS53-216ENST00000574029 NCBP2-AS2Q69YL0 99 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 TIGD7Q6NT04 549 aaPredicted RBP20.91■□□□□ 0.94
VPS53-216ENST00000574029 BORAQ6PGQ7 559 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 CACNA2D3Q8IZS8 1091 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 FATE1Q969F0 183 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 AHCYL2Q96HN2 611 aaKnown RBP20.91■□□□□ 0.94
VPS53-216ENST00000574029 LYSMD1Q96S90 227 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 NUP85Q9BW27 656 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 SPRY4Q9C004 299 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 AMACRQ9UHK6 382 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 CHKBQ9Y259 395 aa20.91■□□□□ 0.94
VPS53-216ENST00000574029 PCYT1BQ9Y5K3 369 aaPredicted RBP20.91■□□□□ 0.94
VPS53-216ENST00000574029 BZW2Q9Y6E2 419 aaKnown RBP20.91■□□□□ 0.94
VPS53-216ENST00000574029 BOD1L1Q8NFC6 3051 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 DUX1O43812 170 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 RAD1O60671 282 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 MAP3K6O95382 1288 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 CLDN7O95471 211 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 ASMTLO95671 621 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 CYP1A2P05177 515 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 ZNF165P49910 485 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 SKOR2Q2VWA4 1001 aaPredicted RBP20.9■□□□□ 0.94
VPS53-216ENST00000574029 TDRD12Q587J7 1177 aaKnown RBP20.9■□□□□ 0.94
VPS53-216ENST00000574029 CCDC122Q5T0U0 273 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 ANKS6Q68DC2 871 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms