RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 LRP8Q14114 963 aa11□□□□□ -0.65
VPS53-207ENST00000570510 STX1AQ16623 288 aa11□□□□□ -0.65
VPS53-207ENST00000570510 UGT8Q16880 541 aa11□□□□□ -0.65
VPS53-207ENST00000570510 EXOC3L4Q17RC7 722 aa11□□□□□ -0.65
VPS53-207ENST00000570510 DPCR1Q3MIW9 517 aa11□□□□□ -0.65
VPS53-207ENST00000570510 FAM72AQ5TYM5 149 aa11□□□□□ -0.65
VPS53-207ENST00000570510 AFMIDQ63HM1 303 aa11□□□□□ -0.65
VPS53-207ENST00000570510 SLC6A19Q695T7 634 aa11□□□□□ -0.65
VPS53-207ENST00000570510 FAM72DQ6L9T8 149 aa11□□□□□ -0.65
VPS53-207ENST00000570510 FAM72BQ86X60 149 aa11□□□□□ -0.65
VPS53-207ENST00000570510 PPP1R3BQ86XI6 285 aa11□□□□□ -0.65
VPS53-207ENST00000570510 ZSWIM9Q86XI8 627 aa11□□□□□ -0.65
VPS53-207ENST00000570510 XYLT1Q86Y38 959 aa11□□□□□ -0.65
VPS53-207ENST00000570510 PELI3Q8N2H9 469 aa11□□□□□ -0.65
VPS53-207ENST00000570510 ANKRD20A12PQ8NF67 263 aa11□□□□□ -0.65
VPS53-207ENST00000570510 CT55Q8WUE5 264 aa11□□□□□ -0.65
VPS53-207ENST00000570510 C19orf60Q96EN9 201 aa11□□□□□ -0.65
VPS53-207ENST00000570510 BPIFA3Q9BQP9 254 aa11□□□□□ -0.65
VPS53-207ENST00000570510 GPR87Q9BY21 358 aa11□□□□□ -0.65
VPS53-207ENST00000570510 SARS2Q9NP81 518 aaKnown RBP11□□□□□ -0.65
VPS53-207ENST00000570510 LHX9Q9NQ69 397 aa11□□□□□ -0.65
VPS53-207ENST00000570510 ZNHIT2Q9UHR6 403 aa11□□□□□ -0.65
VPS53-207ENST00000570510 SLC17A4Q9Y2C5 497 aa11□□□□□ -0.65
VPS53-207ENST00000570510 HEATR9A2RTY3 570 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 PRSS44E7EML9 344 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 CREB3O43889 395 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 SNX2O60749 519 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 SPAG6O75602 509 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 ANKRD34CP0C6C1 535 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 AMD1P17707 334 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 ETV3P41162 512 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 MTIF2P46199 727 aaKnown RBP10.99□□□□□ -0.65
VPS53-207ENST00000570510 NDST2P52849 883 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 SKOR2Q2VWA4 1001 aaPredicted RBP10.99□□□□□ -0.65
VPS53-207ENST00000570510 KRTAP21-3Q3LHN1 58 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 ARTNQ5T4W7 220 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 MANEALQ5VSG8 457 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 PAPD7Q5XG87 772 aaKnown RBP10.99□□□□□ -0.65
VPS53-207ENST00000570510 TRIM65Q6PJ69 517 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 SYVN1Q86TM6 617 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 CISD2Q8N5K1 135 aaKnown RBP10.99□□□□□ -0.65
VPS53-207ENST00000570510 EMC1Q8N766 993 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 RTL3Q8N8U3 475 aaKnown RBP10.99□□□□□ -0.65
VPS53-207ENST00000570510 AVL9Q8NBF6 648 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 SNRNP40Q96DI7 357 aaKnown RBP10.99□□□□□ -0.65
VPS53-207ENST00000570510 TGM7Q96PF1 710 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 TUBGCP2Q9BSJ2 902 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 CINPQ9BW66 212 aaPredicted RBP10.99□□□□□ -0.65
VPS53-207ENST00000570510 KLC2Q9H0B6 622 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 NDST4Q9H3R1 872 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 CATSPERBQ9H7T0 1116 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 PDE7BQ9NP56 450 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 MLXIPLQ9NP71 852 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 ASF1BQ9NVP2 202 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 B4GALT6Q9UBX8 382 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 APEX2Q9UBZ4 518 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 TMEM98Q9Y2Y6 226 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 ST14Q9Y5Y6 855 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 F8P00451 2351 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 DOCK4Q8N1I0 1966 aa10.99□□□□□ -0.65
VPS53-207ENST00000570510 SETD2Q9BYW2 2564 aaPredicted RBP10.99□□□□□ -0.65
VPS53-207ENST00000570510 HIVEP3Q5T1R4 2406 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 TNRC6AQ8NDV7 1962 aaKnown RBP10.98□□□□□ -0.65
VPS53-207ENST00000570510 ZNF185O15231 689 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 PTPN4P29074 926 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 GABRB2P47870 512 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 SCNN1BP51168 640 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 ITGA1P56199 1179 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 SH3BP2P78314 561 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 C15orf59Q2T9L4 293 aaPredicted RBP10.98□□□□□ -0.65
VPS53-207ENST00000570510 VWA3BQ502W6 1294 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 C2CD6Q53TS8 623 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 TCP11X2Q5H9J9 407 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.98□□□□□ -0.65
VPS53-207ENST00000570510 CHST15Q7LFX5 561 aaPredicted RBP10.98□□□□□ -0.65
VPS53-207ENST00000570510 Q8NA96 180 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 PTCD2Q8WV60 388 aaKnown RBP10.98□□□□□ -0.65
VPS53-207ENST00000570510 SHC3Q92529 594 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 C9orf72Q96LT7 481 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 COQ10AQ96MF6 247 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 ILKAPQ9H0C8 392 aaPredicted RBP10.98□□□□□ -0.65
VPS53-207ENST00000570510 METTL5Q9NRN9 209 aaKnown RBP10.98□□□□□ -0.65
VPS53-207ENST00000570510 SIDT1Q9NXL6 827 aaKnown RBP10.98□□□□□ -0.65
VPS53-207ENST00000570510 GPR83Q9NYM4 423 aa10.98□□□□□ -0.65
VPS53-207ENST00000570510 COPG1Q9Y678 874 aaKnown RBP10.98□□□□□ -0.65
VPS53-207ENST00000570510 SHANK1Q9Y566 2161 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 ZFHX3Q15911 3703 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 SMTNL1A8MU46 457 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 F5H423 210 aaPredicted RBP10.97□□□□□ -0.65
VPS53-207ENST00000570510 TOX3O15405 576 aaPredicted RBP10.97□□□□□ -0.65
VPS53-207ENST00000570510 LRRTM2O43300 516 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 CYP2A6P11509 494 aaPredicted RBP10.97□□□□□ -0.65
VPS53-207ENST00000570510 TYRP1P17643 537 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 SLC9A1P19634 815 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 VIPR1P32241 457 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 CSNK1DP48730 415 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 GFERP55789 205 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 RPS18P62269 152 aaKnown RBP10.97□□□□□ -0.65
VPS53-207ENST00000570510 MYL5Q02045 173 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 KYNUQ16719 465 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms