RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SMAPO00193 183 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 MAP3K13O43283 966 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 SGTAO43765 313 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 LZTS3O60299 673 aaPredicted RBP9.24□□□□□ -0.93
VPS35-211ENST00000569950 UGT1A9O60656 530 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 SLU7O95391 586 aaKnown RBP9.24□□□□□ -0.93
VPS35-211ENST00000569950 SLC4A1P02730 911 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 RHOXF2BP0C7M4 288 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 UGT1A6P19224 532 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 UGT1A1P22309 533 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 UGT1A4P22310 534 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 FOXN2P32314 431 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 UGT1A3P35503 534 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 UGT1A5P35504 534 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 NUDT1P36639 197 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 ELK3P41970 407 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 LMAN1P49257 510 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 PLTPP55058 493 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 RACK1P63244 317 aaKnown RBP9.24□□□□□ -0.93
VPS35-211ENST00000569950 ARHGEF7Q14155 803 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 INPP5AQ14642 412 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 LRRC14Q15048 493 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 CHRNA6Q15825 494 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 ATP13A5Q4VNC0 1218 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 DNTTIP2Q5QJE6 756 aaKnown RBP9.24□□□□□ -0.93
VPS35-211ENST00000569950 CCDC70Q6NSX1 233 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 PNCKQ6P2M8 343 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 ADAMTSL4Q6UY14 1074 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 KYAT3Q6YP21 454 aaKnown RBP9.24□□□□□ -0.93
VPS35-211ENST00000569950 PRR23BQ6ZRT6 265 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 CEP68Q76N32 757 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 PCGF5Q86SE9 256 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 SYT12Q8IV01 421 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 NDUFAF2Q8N183 169 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 DNAAF3Q8N9W5 541 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 PEX13Q92968 403 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 AP2M1Q96CW1 435 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 LOXL4Q96JB6 756 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 SERAC1Q96JX3 654 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 EBNA1BP2Q99848 306 aaKnown RBP9.24□□□□□ -0.93
VPS35-211ENST00000569950 RHOXF2Q9BQY4 288 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 TXLNGYQ9BZA5 131 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 FAM83DQ9H4H8 585 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 UGT1A7Q9HAW7 530 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 UGT1A10Q9HAW8 530 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 UGT1A8Q9HAW9 530 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 PARD6AQ9NPB6 346 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 FSCN3Q9NQT6 498 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 SMOXQ9NWM0 555 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 MARCH4Q9P2E8 410 aaPredicted RBP9.24□□□□□ -0.93
VPS35-211ENST00000569950 KLF15Q9UIH9 416 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 UTP11Q9Y3A2 253 aaKnown RBP9.24□□□□□ -0.93
VPS35-211ENST00000569950 ST14Q9Y5Y6 855 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 OAS3Q9Y6K5 1087 aaKnown RBP9.24□□□□□ -0.93
VPS35-211ENST00000569950 SPTBN4Q9H254 2564 aa9.24□□□□□ -0.93
VPS35-211ENST00000569950 IGLV3-16A0A075B6K0 115 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 HEATR9A2RTY3 570 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 TMEM202A6NGA9 273 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 PRR19A6NJB7 356 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 SDR42E2A6NKP2 422 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 MEI4A8MW99 385 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 STX7O15400 261 aaKnown RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 RHOBTB1O94844 696 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 CRTAMO95727 393 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 F7P08709 466 aaPredicted RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 HOXC4P09017 264 aaPredicted RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 FAM153BP0C7A2 387 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 SPAM1P38567 509 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 CTSKP43235 329 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 CSNK1EP49674 416 aaKnown RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 GPX6P59796 221 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 TMPRSS15P98073 1019 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 B4GALNT1Q00973 533 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 SGCGQ13326 291 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 SEPT6Q14141 434 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 FZD2Q14332 565 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 SHBQ15464 509 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 ELF2Q15723 593 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 CCDC6Q16204 474 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 HIF1AQ16665 826 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 BBS9Q3SYG4 887 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 FAM153CQ494X1 144 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 ANKRD20A4Q4UJ75 823 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 WDR45BQ5MNZ6 344 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 HP1BP3Q5SSJ5 553 aaPredicted RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 TEX35Q5T0J7 233 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 ZNF648Q5T619 568 aaPredicted RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 ARMC3Q5W041 872 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 ALS2CLQ60I27 953 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 LAIR1Q6GTX8 287 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 TCEAL6Q6IPX3 200 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 PSAPL1Q6NUJ1 521 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 TRMT10BQ6PF06 316 aaKnown RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 ZC3H14Q6PJT7 736 aaKnown RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 FAM151BQ6UXP7 276 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 UNC5AQ6ZN44 842 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 TRIM74Q86UV6 250 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 HEATR4Q86WZ0 1026 aa9.23□□□□□ -0.93
VPS35-211ENST00000569950 GSPT2Q8IYD1 628 aaKnown RBP9.23□□□□□ -0.93
VPS35-211ENST00000569950 TRAM1L1Q8N609 369 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms