RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 GUCA1BQ9UMX6 200 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 SHOC2Q9UQ13 582 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 TMEM98Q9Y2Y6 226 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 TDRD6O60522 2096 aaKnown RBP14.96□□□□□ -0.01
VPS39-210ENST00000568357 PRSS38A1L453 326 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 EME2A4GXA9 379 aaPredicted RBP14.96□□□□□ -0.01
VPS39-210ENST00000568357 MIF4GDA9UHW6 222 aaKnown RBP14.96□□□□□ -0.01
VPS39-210ENST00000568357 AURKAO14965 403 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 OPA1O60313 960 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 C1QL1O75973 258 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 TJP3O95049 919 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 NDST3O95803 873 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 RBP3P10745 1247 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 CETN2P41208 172 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 EIF3EP60228 445 aaKnown RBP14.96□□□□□ -0.01
VPS39-210ENST00000568357 TARDBPQ13148 414 aaKnown RBP eCLIP14.96□□□□□ -0.01
VPS39-210ENST00000568357 NR0B2Q15466 257 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 EFL1Q7Z2Z2 1120 aaKnown RBP14.96□□□□□ -0.01
VPS39-210ENST00000568357 TMC3Q7Z5M5 1100 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 TAF8Q7Z7C8 310 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 TRIM74Q86UV6 250 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 GKN2Q86XP6 184 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 SFTPA2Q8IWL1 248 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 SDR16C5Q8N3Y7 309 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 IFI44Q8TCB0 444 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 CCHCR1Q8TD31 782 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 SCG3Q8WXD2 468 aaKnown RBP14.96□□□□□ -0.01
VPS39-210ENST00000568357 FAM83DQ9H4H8 585 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 SUDS3Q9H7L9 328 aaPredicted RBP14.96□□□□□ -0.01
VPS39-210ENST00000568357 CARS2Q9HA77 564 aaKnown RBP14.96□□□□□ -0.01
VPS39-210ENST00000568357 ZFYVE1Q9HBF4 777 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 NCKIPSDQ9NZQ3 722 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 SIRPGQ9P1W8 387 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 GULP1Q9UBP9 304 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 TRHDEQ9UKU6 1024 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 SUFUQ9UMX1 484 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 GPR34Q9UPC5 381 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 DOLKQ9UPQ8 538 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 SLC17A4Q9Y2C5 497 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 SPO11Q9Y5K1 396 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 ST14Q9Y5Y6 855 aa14.96□□□□□ -0.01
VPS39-210ENST00000568357 APC2O95996 2303 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 RGSL1A5PLK6 1076 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 TRABD2BA6NFA1 517 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 CASC3O15234 703 aaKnown RBP14.95□□□□□ -0.02
VPS39-210ENST00000568357 INPP4BO15327 924 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 GP1BAP07359 652 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 CHRNA4P43681 627 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 PERM1Q5SV97 790 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 CCDC70Q6NSX1 233 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 DARS2Q6PI48 645 aaKnown RBP14.95□□□□□ -0.02
VPS39-210ENST00000568357 DOK6Q6PKX4 331 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 SLC25A41Q8N5S1 370 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 GPR26Q8NDV2 337 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 CCDC112Q8NEF3 446 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 FAM46DQ8NEK8 389 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 SCARF2Q96GP6 870 aaPredicted RBP14.95□□□□□ -0.02
VPS39-210ENST00000568357 COX14Q96I36 57 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 HIC2Q96JB3 615 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 GORASP1Q9BQQ3 440 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 TSGA10Q9BZW7 698 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 PKD2L2Q9NZM6 624 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 RSPH14Q9UHP6 348 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 PADI4Q9UM07 663 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 ZNF711Q9Y462 761 aa14.95□□□□□ -0.02
VPS39-210ENST00000568357 ACACAQ13085 2346 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 TCRBV7S2A1N4TA0A589 114 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 FADS2P1A8MWK0 482 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 KCNN4O15554 427 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 KRT86O43790 486 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 MT-CO3P00414 261 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 EPOP01588 193 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 PYGLP06737 847 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 GNPDA1P46926 289 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 RPIAP49247 311 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 CCZ1BP86790 482 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 CCZ1P86791 482 aaPredicted RBP14.94□□□□□ -0.02
VPS39-210ENST00000568357 C19orf57Q0VDD7 668 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 KLF1Q13351 362 aaPredicted RBP14.94□□□□□ -0.02
VPS39-210ENST00000568357 SIRPB2Q5JXA9 342 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 ANKRD20A2Q5SQ80 823 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 HENMT1Q5T8I9 393 aaKnown RBP14.94□□□□□ -0.02
VPS39-210ENST00000568357 ANKRD20A1Q5TYW2 823 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 ANKRD20A3Q5VUR7 823 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 CDCP2Q5VXM1 449 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 OGFOD3Q6PK18 319 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 NRROSQ86YC3 692 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 CDKL3Q8IVW4 592 aaPredicted RBP14.94□□□□□ -0.02
VPS39-210ENST00000568357 CACTIN-AS1Q8N1I8 211 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 ARL10Q8N8L6 244 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 DCBLD1Q8N8Z6 715 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 KYQ8NBH2 561 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 IPMKQ8NFU5 416 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 GPBAR1Q8TDU6 330 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 GLMNQ92990 594 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 GPR63Q9BZJ6 419 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 ABCG4Q9H172 646 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 SPATS2LQ9NUQ6 558 aaKnown RBP14.94□□□□□ -0.02
VPS39-210ENST00000568357 EVA1BQ9NVM1 165 aa14.94□□□□□ -0.02
VPS39-210ENST00000568357 CLCA2Q9UQC9 943 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms