RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SLC30A9Q6PML9 568 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 CCDC81Q6ZN84 652 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 PLD5Q8N7P1 536 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 WDR24Q96S15 920 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 AGAP2Q99490 1192 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 RIOK2Q9BVS4 552 aaKnown RBP17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 VPS18Q9P253 973 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 GOLGA6CA6NDK9 693 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 GOLGA6BA6NDN3 693 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 C3orf70A6NLC5 250 aaPredicted RBP17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 ANKRD66B4E2M5 251 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 HGSO14964 777 aaPredicted RBP17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 CBFA2T2O43439 604 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 CLDN7O95471 211 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 GOLGA6DP0CG33 693 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 LIPCP11150 499 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 OR1D5P58170 312 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 TRA2AQ13595 282 aaKnown RBP eCLIP17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 TCEAL1Q15170 157 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 SLC9A4Q6AI14 798 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 ZNF574Q6ZN55 896 aaPredicted RBP17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 CNTD1Q8N815 330 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 SLC35G2Q8TBE7 412 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 DPYSL5Q9BPU6 564 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 SEMA6CQ9H3T2 930 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 GOLGA6AQ9NYA3 693 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 PISDQ9UG56 409 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 CNOT6Q9ULM6 557 aaKnown RBP17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 TMEM98Q9Y2Y6 226 aa17.11■□□□□ 0.33
VPS9D1-203ENST00000563798 HELZ2Q9BYK8 2649 aaKnown RBP17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 PPM1DO15297 605 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 DNAJC6O75061 913 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 JCHAINP01591 159 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 ITIH1P19827 911 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 CD82P27701 267 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 ALDH4A1P30038 563 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 ETV5P41161 510 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 ACTR1BP42025 376 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 FASLGP48023 281 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 SPINT3P49223 89 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 ACTR1AP61163 376 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 C16orf72Q14CZ0 275 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 SLC14A2Q15849 920 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 QPCTQ16769 361 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 MAP9Q49MG5 647 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 TAF1BQ53T94 588 aaPredicted RBP17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 HENMT1Q5T8I9 393 aaKnown RBP17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 LRRC38Q5VT99 294 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 DOK6Q6PKX4 331 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 DTX1Q86Y01 620 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 JAMLQ86YT9 394 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 CCNYQ8ND76 341 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 LPCAT1Q8NF37 534 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 PATE1Q8WXA2 126 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 ZNF830Q96NB3 372 aaPredicted RBP17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 SUDS3Q9H7L9 328 aaPredicted RBP17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 RMI1Q9H9A7 625 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 RDH14Q9HBH5 336 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 ZNHIT6Q9NWK9 470 aaKnown RBP17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 PLEKHM1Q9Y4G2 1056 aa17.1■□□□□ 0.33
VPS9D1-203ENST00000563798 IGHV1OR21-1A0A087WYE8 117 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 IGHV5-10-1A0A0J9YXX1 117 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 C9orf172C9J069 976 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 KCNK1O00180 336 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 AKR1B10O60218 316 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 LIMK2P53671 638 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 MESDQ14696 234 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 SKOR2Q2VWA4 1001 aaPredicted RBP17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 PHF19Q5T6S3 580 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 TRIM74Q86UV6 250 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 GALNT13Q8IUC8 556 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 VSTM4Q8IW00 320 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 RHOT2Q8IXI1 618 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 SFRP1Q8N474 314 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 OR4D9Q8NGE8 314 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 LRRN4Q8WUT4 740 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 TADA1Q96BN2 335 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 OLFM3Q96PB7 478 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 TRIB3Q96RU7 358 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 NUDT22Q9BRQ3 303 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 MLPHQ9BV36 600 aaPredicted RBP17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 ADGRE3Q9BY15 652 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 BRD8Q9H0E9 1235 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 DEF6Q9H4E7 631 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 FAM83DQ9H4H8 585 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 ABHD10Q9NUJ1 306 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 AKAP7Q9P0M2 348 aaPredicted RBP17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 PDP2Q9P2J9 529 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 TTLL3Q9Y4R7 772 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 PCDHGA3Q9Y5H0 932 aa17.09■□□□□ 0.33
VPS9D1-203ENST00000563798 AHCTF1Q8WYP5 2266 aa17.08■□□□□ 0.33
VPS9D1-203ENST00000563798 PRAMEF33A0A0G2JMD5 474 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 C1orf232A0A0U1RR37 186 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 LRRD1A4D1F6 860 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 PRAMEF10O60809 474 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 ZFXP17010 805 aaPredicted RBP17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 CD86P42081 329 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 GPLD1P80108 840 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms