RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 FAM182AQ5T1J6 154 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 ADAMTSL4Q6UY14 1074 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 LUZP1Q86V48 1076 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 ZNF761Q86XN6 746 aaPredicted RBP11.58□□□□□ -0.56
USP3-220ENST00000561381 DTX1Q86Y01 620 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 FAM71BQ8TC56 605 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 JPH3Q8WXH2 748 aaPredicted RBP11.58□□□□□ -0.56
USP3-220ENST00000561381 SYN2Q92777 582 aaPredicted RBP11.58□□□□□ -0.56
USP3-220ENST00000561381 EXTL1Q92935 676 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 AP2M1Q96CW1 435 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 SGF29Q96ES7 293 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 SCARF2Q96GP6 870 aaPredicted RBP11.58□□□□□ -0.56
USP3-220ENST00000561381 CCDC74BQ96LY2 380 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 OR2M4Q96R27 311 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 CBX8Q9HC52 389 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 KCTD5Q9NXV2 234 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 TMEM9Q9P0T7 183 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 CHKBQ9Y259 395 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 TTLL3Q9Y4R7 772 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 PCYT1BQ9Y5K3 369 aaPredicted RBP11.58□□□□□ -0.56
USP3-220ENST00000561381 SDK2Q58EX2 2172 aa11.58□□□□□ -0.56
USP3-220ENST00000561381 A0A0J9YYE9 177 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 A0A1W2PQJ5 194 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 MYO1FO00160 1098 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 INPP4BO15327 924 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 EML2O95834 649 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 TRBC1P01850 177 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 FGF3P11487 239 aaPredicted RBP11.57□□□□□ -0.56
USP3-220ENST00000561381 ARSDP51689 593 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 STC1P52823 247 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 EPHB1P54762 984 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 CYP4F2P78329 520 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 NIPAL4Q0D2K0 466 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 BIRC2Q13490 618 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 PYCR3Q53H96 274 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 MANEAQ5SRI9 462 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 CCDC122Q5T0U0 273 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 ALG1LQ6GMV1 187 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 ALKBH5Q6P6C2 394 aaKnown RBP11.57□□□□□ -0.56
USP3-220ENST00000561381 ARRDC2Q8TBH0 407 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 MAML1Q92585 1016 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 RIOK2Q9BVS4 552 aaKnown RBP11.57□□□□□ -0.56
USP3-220ENST00000561381 POLR1EQ9GZS1 481 aaKnown RBP11.57□□□□□ -0.56
USP3-220ENST00000561381 RBM22Q9NW64 420 aaKnown RBP eCLIP11.57□□□□□ -0.56
USP3-220ENST00000561381 SEPT10Q9P0V9 454 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 RCOR3Q9P2K3 495 aaPredicted RBP11.57□□□□□ -0.56
USP3-220ENST00000561381 PRKAB1Q9Y478 270 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 BZW2Q9Y6E2 419 aaKnown RBP11.57□□□□□ -0.56
USP3-220ENST00000561381 PIEZO2Q9H5I5 2752 aa11.57□□□□□ -0.56
USP3-220ENST00000561381 ZFC3H1O60293 1989 aaKnown RBP11.56□□□□□ -0.56
USP3-220ENST00000561381 IGHV1OR21-1A0A087WYE8 117 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 MATN3O15232 486 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 CLDN7O95471 211 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 ATP1A1P05023 1023 aaKnown RBP11.56□□□□□ -0.56
USP3-220ENST00000561381 HLA-DQB2P05538 268 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 GPR3P46089 330 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 LIMK2P53671 638 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 UBASH3AP57075 661 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 TAS2R40P59535 323 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 ZBED6P86452 979 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 GBE1Q04446 702 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 SLC10A2Q12908 348 aaPredicted RBP11.56□□□□□ -0.56
USP3-220ENST00000561381 NFATC3Q12968 1075 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 PAFAH1B3Q15102 231 aaKnown RBP11.56□□□□□ -0.56
USP3-220ENST00000561381 HADHQ16836 314 aaKnown RBP11.56□□□□□ -0.56
USP3-220ENST00000561381 ANKRD20A8PQ5CZ79 823 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 LRRC49Q8IUZ0 686 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 PQLC3Q8N755 202 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 KCTD6Q8NC69 237 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 LPCAT1Q8NF37 534 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 ZNF564Q8TBZ8 553 aaPredicted RBP11.56□□□□□ -0.56
USP3-220ENST00000561381 HTR3CQ8WXA8 447 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 COX14Q96I36 57 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 WDR24Q96S15 920 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 TDRD1Q9BXT4 1180 aaKnown RBP11.56□□□□□ -0.56
USP3-220ENST00000561381 CDH19Q9H159 772 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 KCNK4Q9NYG8 393 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 CNOT6Q9ULM6 557 aaKnown RBP11.56□□□□□ -0.56
USP3-220ENST00000561381 CAPN11Q9UMQ6 739 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 NENFQ9UMX5 172 aa11.56□□□□□ -0.56
USP3-220ENST00000561381 OAS3Q9Y6K5 1087 aaKnown RBP11.56□□□□□ -0.56
USP3-220ENST00000561381 FLNBO75369 2602 aaKnown RBP11.55□□□□□ -0.56
USP3-220ENST00000561381 SYCE3A1L190 88 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 HGSO14964 777 aaPredicted RBP11.55□□□□□ -0.56
USP3-220ENST00000561381 SLC28A2O43868 658 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 DNAJC6O75061 913 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 GYPCP04921 128 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 FAM87AP0C7U9 286 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 THRAP10827 490 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 ZNF30P17039 623 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 CCNCP24863 283 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 NFKB2Q00653 900 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 IFI16Q16666 785 aaKnown RBP11.55□□□□□ -0.56
USP3-220ENST00000561381 CLPPQ16740 277 aaPredicted RBP11.55□□□□□ -0.56
USP3-220ENST00000561381 TIGD7Q6NT04 549 aaPredicted RBP11.55□□□□□ -0.56
USP3-220ENST00000561381 ZNF765Q7L2R6 523 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 PRICKLE2Q7Z3G6 844 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 PACS2Q86VP3 889 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 GALNT13Q8IUC8 556 aa11.55□□□□□ -0.56
USP3-220ENST00000561381 NDUFAF2Q8N183 169 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms