RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 ELP6Q0PNE2 266 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 EIF3IQ13347 325 aaKnown RBP5.81□□□□□ -1.48
USP3-215ENST00000559771 MAMLD1Q13495 774 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 MTM1Q13496 603 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 HLTFQ14527 1009 aaKnown RBP eCLIP5.81□□□□□ -1.48
USP3-215ENST00000559771 IHHQ14623 411 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 C16orf72Q14CZ0 275 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 NCAPHQ15003 741 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 ELOCQ15369 112 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 SYCP1Q15431 976 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 CT47A1Q5JQC4 288 aaPredicted RBP5.81□□□□□ -1.48
USP3-215ENST00000559771 CERCAMQ5T4B2 595 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 E4F1Q66K89 784 aaPredicted RBP5.81□□□□□ -1.48
USP3-215ENST00000559771 ESRP1Q6NXG1 681 aaKnown RBP5.81□□□□□ -1.48
USP3-215ENST00000559771 SCYL2Q6P3W7 929 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 BRAT1Q6PJG6 821 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 ZNF574Q6ZN55 896 aaPredicted RBP5.81□□□□□ -1.48
USP3-215ENST00000559771 RD3Q7Z3Z2 195 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 IRF2BP2Q7Z5L9 587 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 SPRED1Q7Z699 444 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 SRLQ86TD4 932 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 CCNJLQ8IV13 435 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 MCOLN2Q8IZK6 566 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 PGBD5Q8N414 524 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 FBXO39Q8N4B4 442 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 HTR3CQ8WXA8 447 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 MRFAP1L1Q96HT8 127 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 COQ10AQ96MF6 247 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 WDR92Q96MX6 357 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 ZNF641Q96N77 438 aaPredicted RBP5.81□□□□□ -1.48
USP3-215ENST00000559771 UCN2Q96RP3 112 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 GFM1Q96RP9 751 aaKnown RBP5.81□□□□□ -1.48
USP3-215ENST00000559771 TUBGCP5Q96RT8 1024 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 AGPAT1Q99943 283 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 CNPY3Q9BT09 278 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 SELENOOQ9BVL4 669 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 C1QTNF7Q9BXJ2 289 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 SEMA6CQ9H3T2 930 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 SYNDIG1Q9H7V2 258 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 EPB41L5Q9HCM4 733 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 SPATS2LQ9NUQ6 558 aaKnown RBP5.81□□□□□ -1.48
USP3-215ENST00000559771 SPTLC3Q9NUV7 552 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 UBA2Q9UBT2 640 aaPredicted RBP5.81□□□□□ -1.48
USP3-215ENST00000559771 KLQ9UEF7 1012 aa5.81□□□□□ -1.48
USP3-215ENST00000559771 LIMA1Q9UHB6 759 aaKnown RBP5.81□□□□□ -1.48
USP3-215ENST00000559771 ARHGEF17Q96PE2 2063 aaPredicted RBP5.81□□□□□ -1.48
USP3-215ENST00000559771 UNC13CQ8NB66 2214 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 A0A0U1RQS6 177 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 TMEM191CA6NGB0 347 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 SMTNL1A8MU46 457 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 LGALS16A8MUM7 142 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 A8MX80 341 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 AGRPO00253 132 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 TNFRSF10CO14798 259 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 FGF10O15520 208 aaPredicted RBP5.8□□□□□ -1.48
USP3-215ENST00000559771 HTRA2O43464 458 aaPredicted RBP5.8□□□□□ -1.48
USP3-215ENST00000559771 NUDT21O43809 227 aaKnown RBP5.8□□□□□ -1.48
USP3-215ENST00000559771 TNFP01375 233 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 FGF1P05230 155 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 CEACAM5P06731 702 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 CTSEP14091 401 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 TCF4P15884 667 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 PNLIPP16233 465 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 ERCC2P18074 760 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 TNFAIP3P21580 790 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 LHCGRP22888 699 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 BLKP51451 505 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 NDST2P52849 883 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 AIF1P55008 147 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 MAZP56270 477 aaKnown RBP5.8□□□□□ -1.48
USP3-215ENST00000559771 CYP4F2P78329 520 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 NFKB2Q00653 900 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 NSUN2Q08J23 767 aaKnown RBP eCLIP5.8□□□□□ -1.48
USP3-215ENST00000559771 SLC10A7Q0GE19 358 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 DPYSQ14117 519 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 NR1D2Q14995 579 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 ANO6Q4KMQ2 910 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 C14orf28Q4W4Y0 310 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 SPECC1LQ69YQ0 1117 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 PLEKHA7Q6IQ23 1121 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 ACAD10Q6JQN1 1059 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 PNCKQ6P2M8 343 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 DNAJC24Q6P3W2 148 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 RFLNAQ6ZTI6 216 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 RFX8Q6ZV50 586 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 DPPA4Q7L190 304 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 ZNF438Q7Z4V0 828 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 MTERF4Q7Z6M4 381 aaKnown RBP5.8□□□□□ -1.48
USP3-215ENST00000559771 VASH2Q86V25 355 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 ZFAND4Q86XD8 727 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 GKN2Q86XP6 184 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 ZNF354CQ86Y25 554 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 Q8N9G6 341 aaPredicted RBP5.8□□□□□ -1.48
USP3-215ENST00000559771 FAM46DQ8NEK8 389 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 OR56A4Q8NGH8 313 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 GPBAR1Q8TDU6 330 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 PATE1Q8WXA2 126 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 ZNF592Q92610 1267 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 EXTL1Q92935 676 aa5.8□□□□□ -1.48
USP3-215ENST00000559771 FAM46AQ96IP4 442 aaKnown RBP5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms