RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 BSNQ9UPA5 3926 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 GOLGA4Q13439 2230 aaKnown RBP6.16□□□□□ -1.42
RTF1-204ENST00000558117 IGKV6D-41A0A0C4DH26 115 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 B4DLN1 442 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 PPEF2O14830 753 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 NKX2-8O15522 239 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 PPP6R2O75170 966 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 TCEA3O75764 348 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 LGALS2P05162 132 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 HOXD9P28356 352 aaPredicted RBP6.16□□□□□ -1.42
RTF1-204ENST00000558117 SLC8A1P32418 973 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 MRPL12P52815 198 aaKnown RBP6.16□□□□□ -1.42
RTF1-204ENST00000558117 RPL15P61313 204 aaKnown RBP6.16□□□□□ -1.42
RTF1-204ENST00000558117 BLMHQ13867 455 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 C12orf60Q5U649 245 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 C11orf87Q6NUJ2 197 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 SHC4Q6S5L8 630 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 Q6ZS52 159 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 MARCH9Q86YJ5 346 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 RFX6Q8HWS3 928 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 CACNA2D3Q8IZS8 1091 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 ENAHQ8N8S7 591 aaPredicted RBP6.16□□□□□ -1.42
RTF1-204ENST00000558117 SCAMP5Q8TAC9 235 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 DNAJB3Q8WWF6 145 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 ASB12Q8WXK4 309 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 FAM3CQ92520 227 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 DNASE1L2Q92874 299 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 P2RY11Q96G91 374 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 REXO5Q96IC2 774 aaKnown RBP6.16□□□□□ -1.42
RTF1-204ENST00000558117 FAR2Q96K12 515 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 SPATA33Q96N06 139 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 CRNKL1Q9BZJ0 848 aaKnown RBP6.16□□□□□ -1.42
RTF1-204ENST00000558117 PLA2G2FQ9BZM2 168 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 NT5C3AQ9H0P0 336 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 RGS18Q9NS28 235 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 TMEM161AQ9NX61 479 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 GRHPRQ9UBQ7 328 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 SLC12A4Q9UP95 1085 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 NID2Q14112 1375 aa6.16□□□□□ -1.42
RTF1-204ENST00000558117 MYH8P13535 1937 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 ADAM10O14672 748 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 TLX3O43711 291 aaPredicted RBP6.15□□□□□ -1.42
RTF1-204ENST00000558117 MOSPD3O75425 235 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 IDH1O75874 414 aaKnown RBP6.15□□□□□ -1.42
RTF1-204ENST00000558117 PLAUP00749 431 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 ITGA2BP08514 1039 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 CD63P08962 238 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 ST6GAL1P15907 406 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 CHKAP35790 457 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 TRAPPC10P48553 1259 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 METAP2P50579 478 aaKnown RBP eCLIP6.15□□□□□ -1.42
RTF1-204ENST00000558117 RARSP54136 660 aaKnown RBP6.15□□□□□ -1.42
RTF1-204ENST00000558117 FOXL2P58012 376 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 MRPS6P82932 125 aaKnown RBP6.15□□□□□ -1.42
RTF1-204ENST00000558117 MTA1Q13330 715 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 HNRNPDQ14103 355 aaKnown RBP6.15□□□□□ -1.42
RTF1-204ENST00000558117 RABEP1Q15276 862 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 CELF3Q5SZQ8 465 aaKnown RBP6.15□□□□□ -1.42
RTF1-204ENST00000558117 SLC24A5Q71RS6 500 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 MRPL10Q7Z7H8 261 aaKnown RBP6.15□□□□□ -1.42
RTF1-204ENST00000558117 UEVLDQ8IX04 471 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 LRRC43Q8N309 656 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 STT3BQ8TCJ2 826 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 PIGKQ92643 395 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 RSC1A1Q92681 617 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 FGF13Q92913 245 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 MED8Q96G25 268 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 TRIM2Q9C040 744 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 SPRTNQ9H040 489 aaPredicted RBP6.15□□□□□ -1.42
RTF1-204ENST00000558117 MAGEH1Q9H213 219 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 ELOVL5Q9NYP7 299 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 DAPP1Q9UN19 280 aa6.15□□□□□ -1.42
RTF1-204ENST00000558117 IGSF9BQ9UPX0 1349 aa6.15□□□□□ -1.43
RTF1-204ENST00000558117 MYO5AQ9Y4I1 1855 aaKnown RBP6.15□□□□□ -1.43
RTF1-204ENST00000558117 GREB1LQ9C091 1923 aaPredicted RBP6.15□□□□□ -1.43
RTF1-204ENST00000558117 NBASA2RRP1 2371 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 SLC38A8A6NNN8 435 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 EXTL3O43909 919 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 ACTL6BO94805 426 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 RHOBTB1O94844 696 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 BMP15O95972 392 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 AFPP02771 609 aaKnown RBP6.14□□□□□ -1.43
RTF1-204ENST00000558117 RFPL3SP0C7P2 107 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 SF3A3Q12874 501 aaKnown RBP eCLIP6.14□□□□□ -1.43
RTF1-204ENST00000558117 STIM1Q13586 685 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 KRT72Q14CN4 511 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 TMEM266Q2M3C6 531 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 GLE1Q53GS7 698 aaKnown RBP6.14□□□□□ -1.43
RTF1-204ENST00000558117 WDR93Q6P2C0 686 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 KLHL17Q6TDP4 642 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 RBM44Q6ZP01 1051 aaKnown RBP6.14□□□□□ -1.43
RTF1-204ENST00000558117 ANKRD13BQ86YJ7 626 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 SLC44A2Q8IWA5 706 aaPredicted RBP6.14□□□□□ -1.43
RTF1-204ENST00000558117 HMGB4Q8WW32 186 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 FCRL4Q96PJ5 515 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 SIGLEC11Q96RL6 698 aa6.14□□□□□ -1.43
RTF1-204ENST00000558117 SORBS1Q9BX66 1292 aaKnown RBP6.14□□□□□ -1.43
RTF1-204ENST00000558117 RANBP17Q9H2T7 1088 aaKnown RBP6.14□□□□□ -1.43
RTF1-204ENST00000558117 PABPC3Q9H361 631 aaKnown RBP6.14□□□□□ -1.43
RTF1-204ENST00000558117 ELAC1Q9H777 363 aaKnown RBP6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms