RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 KCTD14Q9BQ13 255 aaPredicted RBP12.3□□□□□ -0.44
LDLR-205ENST00000557933 GPATCH1Q9BRR8 931 aaKnown RBP12.3□□□□□ -0.44
LDLR-205ENST00000557933 TBCDQ9BTW9 1192 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 ABCG8Q9H221 673 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 ADAMTS10Q9H324 1103 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 HIPK3Q9H422 1215 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 POLG2Q9UHN1 485 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 TRHDEQ9UKU6 1024 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 TRIP12Q14669 1992 aaPredicted RBP12.3□□□□□ -0.44
LDLR-205ENST00000557933 TMEM247A6NEH6 219 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 MANSC4A6NHS7 340 aaPredicted RBP12.3□□□□□ -0.44
LDLR-205ENST00000557933 POMCP01189 267 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 NFKBIAP25963 317 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 HMOX2P30519 316 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 TGFBR1P36897 503 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 RPS9P46781 194 aaKnown RBP12.3□□□□□ -0.44
LDLR-205ENST00000557933 CSRP3P50461 194 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 CCT8P50990 548 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 SEMA3AQ14563 771 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 ACAP2Q15057 778 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 C18orf21Q32NC0 220 aaPredicted RBP12.3□□□□□ -0.44
LDLR-205ENST00000557933 RASAL3Q86YV0 1011 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 RNF168Q8IYW5 571 aaPredicted RBP12.3□□□□□ -0.44
LDLR-205ENST00000557933 MIER2Q8N344 545 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 PCYOX1LQ8NBM8 494 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 OR6J1Q8NGC5 347 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 ACDQ96AP0 544 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 PPP1R10Q96QC0 940 aaKnown RBP12.3□□□□□ -0.44
LDLR-205ENST00000557933 MIR1-1HGQ9H1L0 117 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 EML4Q9HC35 981 aaKnown RBP12.3□□□□□ -0.44
LDLR-205ENST00000557933 MIOSQ9NXC5 875 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 GALPQ9UBC7 116 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 MYLKQ15746 1914 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 SCAMP3O14828 347 aaKnown RBP12.29□□□□□ -0.44
LDLR-205ENST00000557933 GPR32O75388 356 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 BMP10O95393 424 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 TBX18O95935 607 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 BMP2P12643 396 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 CDKN1CP49918 316 aaPredicted RBP12.29□□□□□ -0.44
LDLR-205ENST00000557933 DGCR6Q14129 220 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 INPP5AQ14642 412 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 MAPRE2Q15555 327 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 MEP1AQ16819 746 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 SLC36A3Q495N2 470 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 KIAA2013Q8IYS2 634 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 ANKFN1Q8N957 763 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 ZBTB8BQ8NAP8 495 aaPredicted RBP12.29□□□□□ -0.44
LDLR-205ENST00000557933 MYLPFQ96A32 169 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 ZNF560Q96MR9 790 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 CHID1Q9BWS9 393 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 LHPPQ9H008 270 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 PAIP2BQ9ULR5 123 aaKnown RBP12.29□□□□□ -0.44
LDLR-205ENST00000557933 ASPDHA6ND91 283 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 STAU1O95793 577 aaKnown RBP12.29□□□□□ -0.44
LDLR-205ENST00000557933 SLC10A3P09131 477 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 EEF1DP29692 281 aaKnown RBP12.29□□□□□ -0.44
LDLR-205ENST00000557933 GSSP48637 474 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 EIF2B2P49770 351 aaKnown RBP12.29□□□□□ -0.44
LDLR-205ENST00000557933 NFATC3Q12968 1075 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 ADRM1Q16186 407 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 PGS1Q32NB8 556 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 DCAF4L1Q3SXM0 396 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 ABRAXAS1Q6UWZ7 409 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 MILR1Q7Z6M3 343 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 ZNF467Q7Z7K2 595 aaPredicted RBP12.29□□□□□ -0.44
LDLR-205ENST00000557933 TMEM126BQ8IUX1 230 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 SCN4BQ8IWT1 228 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 TMCO5AQ8N6Q1 288 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 BRI3BPQ8WY22 251 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 SNX19Q92543 992 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 CASP10Q92851 521 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 GLT1D1Q96MS3 346 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 PARK7Q99497 189 aaKnown RBP12.29□□□□□ -0.44
LDLR-205ENST00000557933 YIPF2Q9BWQ6 316 aa12.29□□□□□ -0.44
LDLR-205ENST00000557933 SMPD3Q9NY59 655 aaPredicted RBP12.29□□□□□ -0.44
LDLR-205ENST00000557933 AAR2Q9Y312 384 aaKnown RBP12.29□□□□□ -0.44
LDLR-205ENST00000557933 CDC7O00311 574 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 CLASP2O75122 1294 aaKnown RBP12.28□□□□□ -0.44
LDLR-205ENST00000557933 KATNA1O75449 491 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 CAPNS1P04632 268 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 CYP4B1P13584 511 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 MYF6P23409 242 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 SCNN1GP51170 649 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 SPCS2Q15005 226 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 TSNQ15631 228 aaKnown RBP12.28□□□□□ -0.44
LDLR-205ENST00000557933 SV2CQ496J9 727 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 ZNF549Q6P9A3 640 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 LINC00523Q86TU6 105 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 AFAP1L2Q8N4X5 818 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 CDYL2Q8N8U2 506 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 RHNO1Q9BSD3 238 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 HERC2P3Q9BVR0 1158 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 TREX1Q9NSU2 369 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.28□□□□□ -0.44
LDLR-205ENST00000557933 UXTQ9UBK9 157 aaPredicted RBP12.28□□□□□ -0.44
LDLR-205ENST00000557933 PCDHGA4Q9Y5G9 962 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 AZIN1O14977 448 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 C1RP00736 705 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 ITGB6P18564 788 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 IDUAP35475 653 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms