RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 C1QTNF3-AMACRE9PGA6 284 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 AGRPO00253 132 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 TPP1O14773 563 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 SPINT1O43278 529 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 MTSS1O43312 755 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 LIASO43766 372 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 RAMP2O60895 175 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 ZNF821O75541 412 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-230ENST00000557427 GCATO75600 419 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 CTSLP07711 333 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 AKT2P31751 481 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 L1CAMP32004 1257 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 ETV5P41161 510 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 MAPKAPK2P49137 400 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 PMS2P54278 862 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 GYS2P54840 703 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 ARF5P84085 180 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 EIF3IQ13347 325 aaKnown RBP12.55□□□□□ -0.4
SHMT2-230ENST00000557427 FGL2Q14314 439 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 POLD3Q15054 466 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-230ENST00000557427 LLGL1Q15334 1064 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 SEL1L3Q68CR1 1132 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 ZNF787Q6DD87 383 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 TXNRD3NBQ6F5E7 133 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 BORAQ6PGQ7 559 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 DPY19L3Q6ZPD9 716 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 HORMAD1Q86X24 394 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 RYBPQ8N488 228 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-230ENST00000557427 CCDC89Q8N998 374 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 TTC13Q8NBP0 860 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 NETO2Q8NC67 525 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 FAM76AQ8TAV0 307 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 GRIN3AQ8TCU5 1115 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 LMX1AQ8TE12 382 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 UBLCP1Q8WVY7 318 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-230ENST00000557427 ATG4AQ8WYN0 398 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 RAPGEF5Q92565 580 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 ARHGEF2Q92974 986 aaKnown RBP12.55□□□□□ -0.4
SHMT2-230ENST00000557427 CCDC114Q96M63 670 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 TSPYL1Q9H0U9 437 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 MAGEH1Q9H213 219 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 TCEAL2Q9H3H9 227 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-230ENST00000557427 TMBIM4Q9HC24 238 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 SEPT10Q9P0V9 454 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 ASIC3Q9UHC3 531 aa12.55□□□□□ -0.4
SHMT2-230ENST00000557427 PNMA8BQ9ULN7 279 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-230ENST00000557427 A0A1W2PQM1 296 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 HMGB1P1B2RPK0 211 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-230ENST00000557427 C9orf172C9J069 976 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 NDC80O14777 642 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 ALOX15BO15296 676 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 RAD51BO15315 384 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 NUDT17P0C025 328 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 KDELR1P24390 212 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 IVDP26440 423 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 IL1R2P27930 398 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 MIPP30301 263 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 SERPINH1P50454 418 aaKnown RBP12.54□□□□□ -0.4
SHMT2-230ENST00000557427 EIF2B5Q13144 721 aaKnown RBP12.54□□□□□ -0.4
SHMT2-230ENST00000557427 CA9Q16790 459 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 TTMPQ5BVD1 217 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 CARD16Q5EG05 197 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 AGBL2Q5U5Z8 902 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 CRYBG3Q68DQ2 2970 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 NEK5Q6P3R8 708 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 C22orf39Q6P5X5 142 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 BBS12Q6ZW61 710 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 PTAR1Q7Z6K3 402 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-230ENST00000557427 CROCCP2Q86T23 111 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 RBFAQ8N0V3 343 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 TMIEQ8NEW7 156 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 WDR48Q8TAF3 677 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 ARL8AQ96BM9 186 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 EPAS1Q99814 870 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 DHX35Q9H5Z1 703 aaKnown RBP12.54□□□□□ -0.4
SHMT2-230ENST00000557427 DYRK4Q9NR20 520 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 HECAQ9UBI9 543 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-230ENST00000557427 IL36AQ9UHA7 158 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 TUBD1Q9UJT1 453 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 ATP8A1Q9Y2Q0 1164 aa12.54□□□□□ -0.4
SHMT2-230ENST00000557427 GOLGA6L10A6NI86 522 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 A6NNZ2 444 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 D6RAR5 112 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 KDELR3O43731 214 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 PRPSAP2O60256 369 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 LEFTY1O75610 366 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 CD160O95971 181 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 KRT14P02533 472 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 PRNPP04156 253 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 JUNDP17535 347 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 COL8A1P27658 744 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 GKP32189 559 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 ETFBP38117 255 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 UQCRFS1P47985 274 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 CCL7P80098 99 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 ZNF844Q08AG5 666 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 C1orf61Q13536 156 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 TUBB8Q3ZCM7 444 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 TMEM259Q4ZIN3 620 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 CEP85LQ5SZL2 805 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms