RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	SNX7	Q9UNH6	387 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	AKAP11	Q9UKA4	1901 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	OR51F1	A6NGY5	319 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	DHX15	O43143	795 aa	Known RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	XYLB	O75191	536 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	CABYR	O75952	493 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	BMP10	O95393	424 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	TKT	P29401	623 aa	Known RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	NDST2	P52849	883 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	ATP6V0D1	P61421	351 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	RPS7	P62081	194 aa	Known RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	CDC42EP1	Q00587	391 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	EPS8	Q12929	822 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC2A7	Q6PXP3	512 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	TLK2	Q86UE8	772 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	AMIGO3	Q86WK7	504 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	GATAD2A	Q86YP4	633 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	OR4L1	Q8NH43	312 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	NDNF	Q8TB73	568 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	STAG3L4	Q8TBR4	150 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	OR52E6	Q96RD3	313 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	MLPH	Q9BV36	600 aa	Predicted RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	NUAK2	Q9H093	628 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	NXF3	Q9H4D5	531 aa	Known RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	MROH8	Q9H579	483 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	AKTIP	Q9H8T0	292 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	MARCH7	Q9H992	704 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	KLHL1	Q9NR64	748 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	VPS45	Q9NRW7	570 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZNF624	Q9P2J8	865 aa	Predicted RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	CRNN	Q9UBG3	495 aa	Predicted RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005		A0A1W2PQH9	124 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	PMM2	O15305	246 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	RGS10	O43665	173 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZBTB14	O43829	449 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	TSPAN1	O60635	241 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	PAGE1	O75459	146 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	MLYCD	O95822	493 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	CTPS1	P17812	591 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	S100A3	P33764	101 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	THPO	P40225	353 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	CPT1A	P50416	773 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	DSC2	Q02487	901 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	CLC	Q05315	142 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	RBM48	Q5RL73	367 aa	Known RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	TIFAB	Q6ZNK6	161 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	P2RY8	Q86VZ1	359 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	CYP4Z1	Q86W10	505 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC7A5P1	Q8MH63	180 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	GPRC5A	Q8NFJ5	357 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	OR9I1	Q8NGQ6	314 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	MCRS1	Q96EZ8	462 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	HMCES	Q96FZ2	354 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	PIWIL1	Q96J94	861 aa	Known RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	KCNC2	Q96PR1	638 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	FIZ1	Q96SL8	496 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	MYOC	Q99972	504 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	TDRD1	Q9BXT4	1180 aa	Known RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	CAPN10	Q9HC96	672 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	GBA2	Q9HCG7	927 aa	Predicted RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	C11orf16	Q9NQ32	467 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	RPRD1B	Q9NQG5	326 aa	Known RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	CLN6	Q9NWW5	311 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	OPTC	Q9UBM4	332 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	ITGB1BP2	Q9UKP3	347 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	PADI4	Q9UM07	663 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	VPS9D1	Q9Y2B5	631 aa		4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	4.97	□□□□□ -1.61
SYNE2-223	ENST00000557005	VILL	O15195	856 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	FGF10	O15520	208 aa	Predicted RBP	4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	PDE9A	O76083	593 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	UGT2B4	P06133	528 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	TH	P07101	528 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	SMIM10L2A	P0DMW4	78 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	SMIM10L2B	P0DMW5	78 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	CDH1	P12830	882 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	PRKCH	P24723	683 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	MC4R	P32245	332 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	ICAM3	P32942	547 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	IDH2	P48735	452 aa	Known RBP	4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	OR2B6	P58173	313 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	RHOA	P61586	193 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	DDI2	Q5TDH0	399 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	TTC23	Q5W5X9	447 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC15A4	Q8N697	577 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZNF512	Q96ME7	567 aa	Predicted RBP	4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	TMEM74	Q96NL1	305 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	BIRC8	Q96P09	236 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	VAT1	Q99536	393 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	GPR20	Q99678	358 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	EBPL	Q9BY08	206 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	OCEL1	Q9H607	264 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	TLE6	Q9H808	572 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	TBCCD1	Q9NVR7	557 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	MRPL39	Q9NYK5	338 aa	Known RBP	4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	SH3BP4	Q9P0V3	963 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	SIRPG	Q9P1W8	387 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	ADAM30	Q9UKF2	790 aa		4.96	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZNF490	Q9ULM2	529 aa	Predicted RBP	4.96	□□□□□ -1.61

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