RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 IL21RQ9HBE5 538 aa3.93□□□□□ -1.78
LIMA1-208ENST00000551691 PCDHB16Q9NRJ7 776 aa3.93□□□□□ -1.78
LIMA1-208ENST00000551691 TAB2Q9NYJ8 693 aa3.93□□□□□ -1.78
LIMA1-208ENST00000551691 CPSF2Q9P2I0 782 aaKnown RBP3.93□□□□□ -1.78
LIMA1-208ENST00000551691 MGAT4CQ9UBM8 478 aa3.93□□□□□ -1.78
LIMA1-208ENST00000551691 TESQ9UGI8 421 aaKnown RBP3.93□□□□□ -1.78
LIMA1-208ENST00000551691 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.93□□□□□ -1.78
LIMA1-208ENST00000551691 DMRT1Q9Y5R6 373 aa3.93□□□□□ -1.78
LIMA1-208ENST00000551691 MYO9AB2RTY4 2548 aa3.93□□□□□ -1.78
LIMA1-208ENST00000551691 RAD50Q92878 1312 aa3.93□□□□□ -1.78
LIMA1-208ENST00000551691 ATMQ13315 3056 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 CCDC187A0A096LP49 1063 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 SHISA7A6NL88 538 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 A8MV72 311 aaPredicted RBP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 GCOM1H8Y6P7 765 aaPredicted RBP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 RNASET2O00584 256 aaKnown RBP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 TRIM24O15164 1050 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 ZNF185O15231 689 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 DHX16O60231 1041 aaKnown RBP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 CBFA2T3O75081 653 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 CDKL5O76039 1030 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 ONECUT2O95948 504 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 POU1F1P28069 291 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 GKP32189 559 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 SLC16A2P36021 539 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 PSMB10P40306 273 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 SCNN1GP51170 649 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 LIMK1P53667 647 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 SLC25A3Q00325 362 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 SP2Q02086 613 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 PTP4A2Q12974 167 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 IKQ13123 557 aaPredicted RBP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 KCNJ12Q14500 433 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 TAF11Q15544 211 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 TBCCQ15814 346 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 LETM2Q2VYF4 491 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 HSDL1Q3SXM5 330 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 GXYLT1Q4G148 440 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 BMP2KLQ5H9B9 411 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 ZNF766Q5HY98 468 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 FAM90A2PQ658T7 463 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 Q6ZPA2 131 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 GPR149Q86SP6 731 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 PRPF39Q86UA1 669 aaKnown RBP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 MON1AQ86VX9 555 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 ULK2Q8IYT8 1036 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 VPS52Q8N1B4 723 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 TMEM132CQ8N3T6 1108 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 CHCHD4Q8N4Q1 142 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 ENDOVQ8N8Q3 282 aaKnown RBP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 CREB3L4Q8TEY5 395 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 APBB2Q92870 758 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 FAM149B1Q96BN6 582 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 ELP4Q96EB1 424 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 RNFT2Q96EX2 444 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 PTCD3Q96EY7 689 aaKnown RBP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 CCDC17Q96LX7 622 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 HS6ST2Q96MM7 605 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 TAAR1Q96RJ0 339 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 PIP5K1AQ99755 562 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 C16orf70Q9BSU1 422 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 NPLQ9BXD5 320 aaPredicted RBP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 TRIM2Q9C040 744 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 AMBRA1Q9C0C7 1298 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 RABEP2Q9H5N1 569 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 GRPEL1Q9HAV7 217 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 KCNK9Q9NPC2 374 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 SLC35C2Q9NQQ7 365 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 PLSCR4Q9NRQ2 329 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 TBCCD1Q9NVR7 557 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 C2orf42Q9NWW7 574 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 MRPL15Q9P015 296 aaKnown RBP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 CCPG1Q9ULG6 757 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 DHDHQ9UQ10 334 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 RCE1Q9Y256 329 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 ZNF711Q9Y462 761 aa3.92□□□□□ -1.78
LIMA1-208ENST00000551691 COPG1Q9Y678 874 aaKnown RBP3.92□□□□□ -1.78
LIMA1-208ENST00000551691 MGAQ8IWI9 3026 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 SPAARA0A1B0GVQ0 90 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 NPIPB15A6NHN6 443 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 AP4M1O00189 453 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 TNFSF14O43557 240 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 RAMP2O60895 175 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 FAM20BO75063 409 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 LRP3O75074 770 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 PMPCBO75439 489 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 PRDM1O75626 825 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 HSPA4LO95757 839 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 MLYCDO95822 493 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 CFIP05156 583 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 CYP3A4P08684 503 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 ZNF806P0C7X5 589 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 UBTFL1P0CB47 393 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 TMIGD3P0DMS9 266 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 HADHAP40939 763 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 JAK3P52333 1124 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 VAV2P52735 878 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 MRPL12P52815 198 aaKnown RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms