RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 PDHA1P08559 390 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 RARAP10276 462 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 CSF2RBP32927 897 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 UGT1A3P35503 534 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 MAXP61244 160 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 CYP4F2P78329 520 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 PTSQ03393 145 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 FILIP1LQ4L180 1135 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 DCAF12Q5T6F0 453 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 NKAIN2Q5VXU1 208 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 E4F1Q66K89 784 aaPredicted RBP12.78□□□□□ -0.36
PTCH1-218ENST00000548945 LRRC66Q68CR7 880 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 CAVIN1Q6NZI2 390 aaKnown RBP12.78□□□□□ -0.36
PTCH1-218ENST00000548945 BORAQ6PGQ7 559 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 DOK6Q6PKX4 331 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 WDR74Q6RFH5 385 aaPredicted RBP12.78□□□□□ -0.36
PTCH1-218ENST00000548945 GALNT13Q8IUC8 556 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 SFRP1Q8N474 314 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 IL22RA1Q8N6P7 574 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 EXD1Q8NHP7 514 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 HSPH1Q92598 858 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 ART4Q93070 314 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 FATE1Q969F0 183 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 COX14Q96I36 57 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 CATSPER2Q96P56 530 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 POLR1EQ9GZS1 481 aaKnown RBP12.78□□□□□ -0.36
PTCH1-218ENST00000548945 NT5MQ9NPB1 228 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 HAUS2Q9NVX0 235 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 SLC39A1Q9NY26 324 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 VPS18Q9P253 973 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 MYO1AQ9UBC5 1043 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 B3GALT1Q9Y5Z6 326 aa12.78□□□□□ -0.36
PTCH1-218ENST00000548945 SPTAN1Q13813 2472 aaKnown RBP12.77□□□□□ -0.37
PTCH1-218ENST00000548945 ZNF891A8MT65 544 aaPredicted RBP12.77□□□□□ -0.37
PTCH1-218ENST00000548945 SMTNL1A8MU46 457 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 DUX1O43812 170 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 TCF4P15884 667 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 CTPS1P17812 591 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 CA4P22748 312 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 STC1P52823 247 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 RPL26P61254 145 aaKnown RBP12.77□□□□□ -0.37
PTCH1-218ENST00000548945 SLC25A11Q02978 314 aaKnown RBP12.77□□□□□ -0.37
PTCH1-218ENST00000548945 TYRO3Q06418 890 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 CLCA4Q14CN2 919 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 FIGNQ5HY92 759 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.77□□□□□ -0.37
PTCH1-218ENST00000548945 CCDC183Q5T5S1 534 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 CACNA2D3Q8IZS8 1091 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 BMPERQ8N8U9 685 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 OR10G6Q8NH81 332 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 FAM71BQ8TC56 605 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 SLC37A2Q8TED4 501 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 MAML1Q92585 1016 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 SCAMP4Q969E2 229 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 PMEPA1Q969W9 287 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 AHCYL2Q96HN2 611 aaKnown RBP12.77□□□□□ -0.37
PTCH1-218ENST00000548945 LYSMD1Q96S90 227 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 ZPBPQ9BS86 351 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 SARS2Q9NP81 518 aaKnown RBP12.77□□□□□ -0.37
PTCH1-218ENST00000548945 IP6K2Q9UHH9 426 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 CD84Q9UIB8 345 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 RPL26L1Q9UNX3 145 aaKnown RBP12.77□□□□□ -0.37
PTCH1-218ENST00000548945 TMEM98Q9Y2Y6 226 aa12.77□□□□□ -0.37
PTCH1-218ENST00000548945 USP9XQ93008 2570 aaPredicted RBP12.76□□□□□ -0.37
PTCH1-218ENST00000548945 A0A1B0GTH6 734 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 SLC2A4P14672 509 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 LIFP15018 202 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 IL4RP24394 825 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 MAN1A1P33908 653 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 GARSP41250 739 aaKnown RBP12.76□□□□□ -0.37
PTCH1-218ENST00000548945 EPHB1P54762 984 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 EPHA4P54764 986 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 NFKB2Q00653 900 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 GALNT2Q10471 571 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 PTPRRQ15256 657 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 TXNRD3NBQ6F5E7 133 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 TIGD7Q6NT04 549 aaPredicted RBP12.76□□□□□ -0.37
PTCH1-218ENST00000548945 RFLNAQ6ZTI6 216 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 ARHGAP22Q7Z5H3 698 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 FAM129CQ86XR2 697 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 AVL9Q8NBF6 648 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 JPH3Q8WXH2 748 aaPredicted RBP12.76□□□□□ -0.37
PTCH1-218ENST00000548945 SH3KBP1Q96B97 665 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 SLC45A3Q96JT2 553 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 TSGA13Q96PP4 275 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 SLC38A3Q99624 504 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 EFHD1Q9BUP0 239 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 SPRY4Q9C004 299 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 TRIM4Q9C037 500 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 EPB41L1Q9H4G0 881 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 STN1Q9H668 368 aaKnown RBP12.76□□□□□ -0.37
PTCH1-218ENST00000548945 RMI1Q9H9A7 625 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 OCIAD1Q9NX40 245 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 TMEM9Q9P0T7 183 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 PILRAQ9UKJ1 303 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 PLEKHM1Q9Y4G2 1056 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 BZW2Q9Y6E2 419 aaKnown RBP12.76□□□□□ -0.37
PTCH1-218ENST00000548945 RELNP78509 3460 aa12.76□□□□□ -0.37
PTCH1-218ENST00000548945 SPTBN1Q01082 2364 aaKnown RBP12.76□□□□□ -0.37
PTCH1-218ENST00000548945 RGSL1A5PLK6 1076 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms