RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 TBC1D3DA0A087WVF3 549 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 TBC1D3IA0A087WXS9 549 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 TBC1D3EA0A087X179 549 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 TBC1D3KA0A087X1G2 549 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 IGHV1OR15-9A0A0B4J2B8 117 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 CCDC162PA2VCL2 907 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 TBC1D3FA6NER0 549 aaPredicted RBP15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 TBC1D3LB9A6J9 549 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 TNFRSF10AO00220 468 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 CD3EAPO15446 510 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 CDH16O75309 829 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 GOT2P00505 430 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 PDGFBP01127 241 aaPredicted RBP15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 C1QAP02745 245 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 TBC1D3HP0C7X1 549 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 FOXN2P32314 431 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 CNR2P34972 360 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 SERPINB9P50453 376 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 PEX6Q13608 980 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 LRRC73Q5JTD7 316 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 HP1BP3Q5SSJ5 553 aaPredicted RBP15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 LGSNQ5TDP6 509 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 TBC1D3GQ6DHY5 549 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 TBC1D3CQ6IPX1 549 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 Q6ZVL8 140 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 LONP2Q86WA8 852 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 CILP2Q8IUL8 1156 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 C1orf210Q8IVY1 113 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 TBC1D3Q8IZP1 549 aaPredicted RBP15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 AP2M1Q96CW1 435 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 WRAP53Q9BUR4 548 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 SLC17A9Q9BYT1 436 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 SLC6A17Q9H1V8 727 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 SLC2A6Q9UGQ3 507 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 ITM2BQ9Y287 266 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 COMMD10Q9Y6G5 202 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 MUC3AQ02505 3323 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 PIKFYVEQ9Y2I7 2098 aa15.94■□□□□ 0.14
PRPF40A-212ENST00000545856 A0A1W2PQU0 124 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 GPR89AB7ZAQ6 455 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 QSOX1O00391 747 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 MMP20O60882 483 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 SLC4A1P02730 911 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 HOXC4P09017 264 aaPredicted RBP15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 GPR89BP0CG08 455 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 TDGF1P13385 188 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 GP5P40197 560 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 ETV3P41162 512 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 LEPRP48357 1165 aaKnown RBP15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 POLD2P49005 469 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 ARSDP51689 593 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 IFFO1Q0D2I5 559 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 KBTBD12Q3ZCT8 623 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 HSP90AA5PQ58FG0 334 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 ZNF470Q6ECI4 717 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 ADAMTSL4Q6UY14 1074 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 DTWD2Q8NBA8 298 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 C2CD4AQ8NCU7 369 aaPredicted RBP15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 GPR26Q8NDV2 337 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 ZNF398Q8TD17 642 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 FOXJ1Q92949 421 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 TOE1Q96GM8 510 aaKnown RBP15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 SMIM14Q96QK8 99 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 RUFY1Q96T51 708 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 ZCCHC2Q9C0B9 1178 aaKnown RBP15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 PPANQ9NQ55 473 aaKnown RBP15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 GGT7Q9UJ14 662 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 CYP8B1Q9UNU6 501 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 KCTD3Q9Y597 815 aa15.93■□□□□ 0.14
PRPF40A-212ENST00000545856 GOLGA8CPA6NN73 597 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 CFAP99D6REC4 459 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 PLK4O00444 970 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 PI15O43692 258 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 INHBAP08476 426 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 GM2AP17900 193 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 ACSL1P33121 698 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 PTGER3P43115 390 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 DNAJC3Q13217 504 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 LRRC14Q15048 493 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 LDLRAP1Q5SW96 308 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 TEDDM1Q5T9Z0 273 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 GRTP1Q5TC63 336 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 KIAA0895LQ68EN5 471 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 TRMT10BQ6PF06 316 aaKnown RBP15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 CES3Q6UWW8 571 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 PACS1Q6VY07 963 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 NXPE1Q8N323 547 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 DDHD1Q8NEL9 900 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 SLC44A1Q8WWI5 657 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 MTBPQ96DY7 904 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 DHRS4Q9BTZ2 278 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 ABCG8Q9H221 673 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 ASB8Q9H765 288 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 BPIFA1Q9NP55 256 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 C2orf42Q9NWW7 574 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 PSMC3IPQ9P2W1 217 aaPredicted RBP15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 CRLS1Q9UJA2 301 aa15.92■□□□□ 0.14
PRPF40A-212ENST00000545856 DOCK9Q9BZ29 2069 aa15.91■□□□□ 0.14
PRPF40A-212ENST00000545856 A0A0C4DFX4 3053 aa15.91■□□□□ 0.14
PRPF40A-212ENST00000545856 ZNF318Q5VUA4 2279 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms