RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 MARK2Q7KZI7 788 aaKnown RBP17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 SCAMP4Q969E2 229 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 AGAP2Q99490 1192 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 MGME1Q9BQP7 344 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 EFHD1Q9BUP0 239 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 TP53TG5Q9Y2B4 290 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 PPIL1Q9Y3C6 166 aa17.7■□□□□ 0.42
CLSTN3-214ENST00000542663 MTSS1O43312 755 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 PGLSO95336 258 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 CTPS1P17812 591 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 TCN2P20062 427 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 F8A1P23610 371 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 HSPA9P38646 679 aaKnown RBP17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 HCAR3P49019 387 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 MAXP61244 160 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 HHEXQ03014 270 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 KLRB1Q12918 225 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 FKBP15Q5T1M5 1219 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 C16orf46Q6P387 395 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 PIH1D2Q8WWB5 315 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 AP2M1Q96CW1 435 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 COX14Q96I36 57 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 ZPBPQ9BS86 351 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 SYT11Q9BT88 431 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 TRIM7Q9C029 511 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 ETNK2Q9NVF9 386 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 KCNMB2Q9Y691 235 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 SHANK1Q9Y566 2161 aa17.69■□□□□ 0.42
CLSTN3-214ENST00000542663 MAFKO60675 156 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 PDHA1P08559 390 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 DESP17661 470 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 NFKBIAP25963 317 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 MIPP30301 263 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 STAT5AP42229 794 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 PPM1FP49593 454 aaPredicted RBP17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 LRP8Q14114 963 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 C4orf17Q53FE4 359 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 CT47A1Q5JQC4 288 aaPredicted RBP17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 LRRC66Q68CR7 880 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 PLEKHA7Q6IQ23 1121 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 KDELC2Q7Z4H8 507 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 GALNT13Q8IUC8 556 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 LZTR1Q8N653 840 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 NEK11Q8NG66 645 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 ENOX1Q8TC92 643 aaKnown RBP17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 NCSTNQ92542 709 aa17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 TRIT1Q9H3H1 467 aaKnown RBP17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 SARS2Q9NP81 518 aaKnown RBP17.68■□□□□ 0.42
CLSTN3-214ENST00000542663 A6NCN8 305 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 DNAJC6O75061 913 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 MAN1A1P33908 653 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 MLLT10P55197 1068 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 MC1RQ01726 317 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 PTSQ03393 145 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 NFATC2Q13469 925 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 HIST2H2BCQ6DN03 193 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 USP45Q70EL2 814 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 RNF31Q96EP0 1072 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 PARVAQ9NVD7 372 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 SIDT1Q9NXL6 827 aaKnown RBP17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 TBC1D29Q9UFV1 150 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 KLHL3Q9UH77 587 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 PRKAB1Q9Y478 270 aa17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 OAS3Q9Y6K5 1087 aaKnown RBP17.67■□□□□ 0.42
CLSTN3-214ENST00000542663 TMEM191CA6NGB0 347 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 POLR1CO15160 346 aaPredicted RBP17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 INPP4BO15327 924 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 PRPSAP2O60256 369 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 FZD6O60353 706 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 LRCH4O75427 683 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 ATP1A1P05023 1023 aaKnown RBP17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 FURINP09958 794 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 ZNF28P17035 718 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 COPB1P53618 953 aaKnown RBP17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 SEPT6Q14141 434 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 MAP7Q14244 749 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 RALGPS1Q5JS13 557 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 ARMC12Q5T9G4 340 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 IYDQ6PHW0 289 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 ZNF765Q7L2R6 523 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 NLRP8Q86W28 1048 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 PSTKQ8IV42 348 aaKnown RBP17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 ZNHIT2Q9UHR6 403 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 KCTD3Q9Y597 815 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 GTF3C3Q9Y5Q9 886 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 RPS6KL1Q9Y6S9 549 aa17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 MN1Q10571 1320 aaPredicted RBP17.66■□□□□ 0.42
CLSTN3-214ENST00000542663 UNC79Q9P2D8 2635 aa17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 TMCO5BA8MYB1 307 aa17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 AMPD1P23109 780 aa17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 ZNF135P52742 658 aaPredicted RBP17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 EPHA4P54764 986 aa17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 IHHQ14623 411 aa17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 TCTN3Q6NUS6 607 aa17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 CHST15Q7LFX5 561 aaPredicted RBP17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 IRF2BP2Q7Z5L9 587 aa17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 ESX1Q8N693 406 aa17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 PCMTD1Q96MG8 357 aaPredicted RBP17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 RIOK2Q9BVS4 552 aaKnown RBP17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 TBC1D10AQ9BXI6 508 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms