RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 COQ10BQ9H8M1 238 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 PREBQ9HCU5 417 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 SMPD4Q9NXE4 827 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 NSMCE4AQ9NXX6 385 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 CACNA2D2Q9NY47 1150 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 ADA2Q9NZK5 511 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 SUCOQ9UBS9 1254 aaKnown RBP17.14■□□□□ 0.33
SPIDR-227ENST00000541342 BCAP29Q9UHQ4 241 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 CCDC160A6NGH7 325 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 NPHS1O60500 1241 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 F11P03951 625 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 CNPP09543 421 aaKnown RBP17.14■□□□□ 0.33
SPIDR-227ENST00000541342 CDH4P55283 916 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 TAS2R39P59534 338 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 ZXDBP98169 803 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 POTEHQ6S545 545 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 TRIM67Q6ZTA4 783 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 POMKQ9H5K3 350 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 IL21Q9HBE4 155 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 UTP6Q9NYH9 597 aaKnown RBP17.14■□□□□ 0.33
SPIDR-227ENST00000541342 DENND4CQ5VZ89 1909 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 PRORSD1PA6NEY8 169 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 SCAMP3O14828 347 aaKnown RBP17.13■□□□□ 0.33
SPIDR-227ENST00000541342 HNRNPRO43390 633 aaKnown RBP17.13■□□□□ 0.33
SPIDR-227ENST00000541342 CDK4P11802 303 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 CDH2P19022 906 aaPredicted RBP17.13■□□□□ 0.33
SPIDR-227ENST00000541342 PPM1AP35813 382 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 EPHB3P54753 998 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 GNA12Q03113 381 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 BORAQ6PGQ7 559 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 TSNARE1Q96NA8 513 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 MRPL46Q9H2W6 279 aaKnown RBP17.13■□□□□ 0.33
SPIDR-227ENST00000541342 ARNT2Q9HBZ2 717 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 ZBBXA8MT70 800 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 TSPAN3O60637 253 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 TMCC1O94876 653 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 STMN1P16949 149 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 PPHLN1Q8NEY8 458 aaKnown RBP17.13■□□□□ 0.33
SPIDR-227ENST00000541342 CEP70Q8NHQ1 597 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 SLC29A1Q99808 456 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 TRPC7Q9HCX4 862 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 IGSF5Q9NSI5 407 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 TREX1Q9NSU2 369 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 SARDHQ9UL12 918 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 TGM5O43548 720 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 DNAJB1P25685 340 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 C6orf10Q5SRN2 563 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 ADGRF1Q5T601 910 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 HMBOX1Q6NT76 420 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 CYHR1Q6ZMK1 362 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 CARM1Q86X55 608 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 FAM110BQ8TC76 370 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 ADAMTS19Q8TE59 1207 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 EME1Q96AY2 570 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 VPS45Q9NRW7 570 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 EPS15L1Q9UBC2 864 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 PADI4Q9UM07 663 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 FIS1Q9Y3D6 152 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 AP4S1Q9Y587 144 aa17.13■□□□□ 0.33
SPIDR-227ENST00000541342 NELFEP18615 380 aaKnown RBP17.12■□□□□ 0.33
SPIDR-227ENST00000541342 CA8P35219 290 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 PPP3CCP48454 512 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 NR1H2P55055 460 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 HTRA4P83105 476 aaPredicted RBP17.12■□□□□ 0.33
SPIDR-227ENST00000541342 TXNL4AP83876 142 aaKnown RBP17.12■□□□□ 0.33
SPIDR-227ENST00000541342 TMEM259Q4ZIN3 620 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 DNAJC5GQ8N7S2 189 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 MAGEH1Q9H213 219 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 MRM3Q9HC36 420 aaKnown RBP17.12■□□□□ 0.33
SPIDR-227ENST00000541342 NCKIPSDQ9NZQ3 722 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 CXXC1Q9P0U4 656 aaPredicted RBP17.12■□□□□ 0.33
SPIDR-227ENST00000541342 GMPR2Q9P2T1 348 aaKnown RBP17.12■□□□□ 0.33
SPIDR-227ENST00000541342 UXTQ9UBK9 157 aaPredicted RBP17.12■□□□□ 0.33
SPIDR-227ENST00000541342 CDH23Q9H251 3354 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 ALPK3Q96L96 1907 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 CTSAP10619 480 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 PSMC3P17980 439 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 HPCAP84074 193 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 RHDQ02161 417 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 PDAP1Q13442 181 aaKnown RBP17.12■□□□□ 0.33
SPIDR-227ENST00000541342 MTX3Q5HYI7 312 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 TXNDC8Q6A555 127 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 REP15Q6BDI9 236 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 PIWIL4Q7Z3Z4 852 aaKnown RBP17.12■□□□□ 0.33
SPIDR-227ENST00000541342 PNPLA1Q8N8W4 532 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 TMIGD2Q96BF3 282 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 MRPL57Q9BQC6 102 aaKnown RBP17.12■□□□□ 0.33
SPIDR-227ENST00000541342 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.12■□□□□ 0.33
SPIDR-227ENST00000541342 GTSE1Q9NYZ3 720 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 CD300AQ9UGN4 299 aa17.12■□□□□ 0.33
SPIDR-227ENST00000541342 TRPC5OSA6NMA1 111 aa17.11■□□□□ 0.33
SPIDR-227ENST00000541342 NRG2O14511 850 aaPredicted RBP17.11■□□□□ 0.33
SPIDR-227ENST00000541342 MBL2P11226 248 aaPredicted RBP17.11■□□□□ 0.33
SPIDR-227ENST00000541342 RANBP1P43487 201 aa17.11■□□□□ 0.33
SPIDR-227ENST00000541342 LBX1P52954 281 aa17.11■□□□□ 0.33
SPIDR-227ENST00000541342 DNAJB13P59910 316 aa17.11■□□□□ 0.33
SPIDR-227ENST00000541342 RBM20Q5T481 1227 aaKnown RBP17.11■□□□□ 0.33
SPIDR-227ENST00000541342 IL31Q6EBC2 164 aa17.11■□□□□ 0.33
SPIDR-227ENST00000541342 KLHL23Q8NBE8 558 aa17.11■□□□□ 0.33
SPIDR-227ENST00000541342 PTCD2Q8WV60 388 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms