RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 C3orf62Q6ZUJ4 267 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 TRMT10CQ7L0Y3 403 aaKnown RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 NLRP9Q7RTR0 991 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 HORMAD1Q86X24 394 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 CCNJLQ8IV13 435 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 C1orf210Q8IVY1 113 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 PELI3Q8N2H9 469 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 DEFB119Q8N690 84 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 UBLCP1Q8WVY7 318 aaPredicted RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 SCAMP4Q969E2 229 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 AGAP2Q99490 1192 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 NAT9Q9BTE0 207 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 GPR174Q9BXC1 333 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 BTBD1Q9H0C5 482 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 ABCG8Q9H221 673 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 FAM96AQ9H5X1 160 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 C6orf106Q9H6K1 298 aaPredicted RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 SGK2Q9HBY8 427 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 IL26Q9NPH9 171 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 SMYD2Q9NRG4 433 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 PKD2L2Q9NZM6 624 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 SLC17A6Q9P2U8 582 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 RIMKLBQ9ULI2 386 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 PKP3Q9Y446 797 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 TDRD6O60522 2096 aaKnown RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 KNL1Q8NG31 2342 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 PI4KAP42356 2102 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 FANCMQ8IYD8 2048 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 TNRC6BQ9UPQ9 1833 aaKnown RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 USP34Q70CQ2 3546 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 TCRBV9S1A1TA0A576 114 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 CXorf49A8MYA2 514 aaPredicted RBP9.3□□□□□ -0.92
DDX55-208ENST00000541259 C10orf142B7Z368 130 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 PSMD11O00231 422 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 WNT9AO14904 365 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 RIPK2O43353 540 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 UGT1A9O60656 530 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 ZNF217O75362 1048 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 ERLIN1O75477 346 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 TM7SF2O76062 418 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 PAK4O96013 591 aaPredicted RBP9.3□□□□□ -0.92
DDX55-208ENST00000541259 GOT2P00505 430 aaKnown RBP9.3□□□□□ -0.92
DDX55-208ENST00000541259 C1QAP02745 245 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 ERVK-10P10266 1014 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 UGT1A6P19224 532 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 BCKDHBP21953 392 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 UGT1A1P22309 533 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 UGT1A4P22310 534 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 CD6P30203 668 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 OXTRP30559 389 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 MC4RP32245 332 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 UGT1A3P35503 534 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 UGT1A5P35504 534 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 PDE1BQ01064 536 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 CREB5Q02930 508 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 LAMB3Q13751 1172 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 SLC29A2Q14542 456 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 SEMA3AQ14563 771 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 CHRNA6Q15825 494 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 LONRF1Q17RB8 773 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 ZNF284Q2VY69 593 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 MAP9Q49MG5 647 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 KIAA0930Q6ICG6 404 aaPredicted RBP9.3□□□□□ -0.92
DDX55-208ENST00000541259 KDM7AQ6ZMT4 941 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 PTAR1Q7Z6K3 402 aaPredicted RBP9.3□□□□□ -0.92
DDX55-208ENST00000541259 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.3□□□□□ -0.92
DDX55-208ENST00000541259 OR2T34Q8NGX1 318 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 OR6P1Q8NGX9 317 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 GSDMBQ8TAX9 411 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 FBF1Q8TES7 1133 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 HNRNPLLQ8WVV9 542 aaKnown RBP9.3□□□□□ -0.92
DDX55-208ENST00000541259 ZBTB9Q96C00 473 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 DTD2Q96FN9 168 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 RIOK2Q9BVS4 552 aaKnown RBP9.3□□□□□ -0.92
DDX55-208ENST00000541259 C1QTNF2Q9BXJ5 285 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 SLC17A9Q9BYT1 436 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 FAM83DQ9H4H8 585 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 EBF2Q9HAK2 575 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 UGT1A7Q9HAW7 530 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 UGT1A10Q9HAW8 530 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 UGT1A8Q9HAW9 530 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 PREBQ9HCU5 417 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 C20orf96Q9NUD7 363 aaPredicted RBP9.3□□□□□ -0.92
DDX55-208ENST00000541259 EVA1BQ9NVM1 165 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 MOCS1Q9NZB8 636 aa9.3□□□□□ -0.92
DDX55-208ENST00000541259 MARCH4Q9P2E8 410 aaPredicted RBP9.3□□□□□ -0.92
DDX55-208ENST00000541259 GLYATL1P3A0A0U1RQE8 302 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 LRRC72A6NJI9 287 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 H7C0S8 307 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 K7ESM1 405 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 RAD51BO15315 384 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 SLC31A1O15431 190 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 SHBGP04278 402 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 IGHV4-34P06331 123 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 GSTA2P09210 222 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 TSHRP16473 764 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 HOXA6P31267 233 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 FOXN2P32314 431 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 SPAM1P38567 509 aa9.29□□□□□ -0.92
DDX55-208ENST00000541259 HADHAP40939 763 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms