RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ZNF662Q6ZS27 426 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 EFL1Q7Z2Z2 1120 aaKnown RBP14.12□□□□□ -0.15
USP28-209ENST00000540925 PEX26Q7Z412 305 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 C17orf82Q86X59 251 aaPredicted RBP14.12□□□□□ -0.15
USP28-209ENST00000540925 PROSER1Q86XN7 944 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 KLHDC8BQ8IXV7 354 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 PDCD7Q8N8D1 485 aaKnown RBP14.12□□□□□ -0.15
USP28-209ENST00000540925 GLMNQ92990 594 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 NAT6Q93015 286 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 HIC2Q96JB3 615 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 CARS2Q9HA77 564 aaKnown RBP14.12□□□□□ -0.15
USP28-209ENST00000540925 ZFYVE1Q9HBF4 777 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 EVA1BQ9NVM1 165 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 UBP1Q9NZI7 540 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 PADI4Q9UM07 663 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 SUFUQ9UMX1 484 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 CLCA2Q9UQC9 943 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 ZNF711Q9Y462 761 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 NBEAQ8NFP9 2946 aa14.12□□□□□ -0.15
USP28-209ENST00000540925 GOLGA6L6A8MZA4 724 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 AURKAO14965 403 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 CASC3O15234 703 aaKnown RBP14.11□□□□□ -0.15
USP28-209ENST00000540925 TJP3O95049 919 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 MT-CO3P00414 261 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 PIRTP0C851 137 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 RBP3P10745 1247 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 JUPP14923 745 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 RPIAP49247 311 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 MPP3Q13368 585 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 RTP5Q14D33 572 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 TCEA2Q15560 299 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 KDELC2Q7Z4H8 507 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 TRIM74Q86UV6 250 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 SFTPA2Q8IWL1 248 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 GPR26Q8NDV2 337 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 MDM1Q8TC05 714 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 UBE2Q2Q8WVN8 375 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 SCG3Q8WXD2 468 aaKnown RBP14.11□□□□□ -0.15
USP28-209ENST00000540925 NRSN2Q9GZP1 204 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 CDH19Q9H159 772 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 GBA3Q9H227 469 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 FAM83DQ9H4H8 585 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 PKD2L2Q9NZM6 624 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 VPS18Q9P253 973 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 KLHL8Q9P2G9 620 aaPredicted RBP14.11□□□□□ -0.15
USP28-209ENST00000540925 RABGEF1Q9UJ41 708 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 GPR34Q9UPC5 381 aa14.11□□□□□ -0.15
USP28-209ENST00000540925 PCYT1BQ9Y5K3 369 aaPredicted RBP14.11□□□□□ -0.15
USP28-209ENST00000540925 OAS3Q9Y6K5 1087 aaKnown RBP14.11□□□□□ -0.15
USP28-209ENST00000540925 ARHGEF17Q96PE2 2063 aaPredicted RBP14.1□□□□□ -0.15
USP28-209ENST00000540925 CPED1A4D0V7 1026 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 H7C0C1 242 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 NTN3O00634 580 aaPredicted RBP14.1□□□□□ -0.15
USP28-209ENST00000540925 DNAJC6O75061 913 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 ADRA1AP35348 466 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 HMGCLP35914 325 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 ADCY8P40145 1251 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 ATP5OP48047 213 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 PDX1P52945 283 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 EIF3EP60228 445 aaKnown RBP14.1□□□□□ -0.15
USP28-209ENST00000540925 CCZ1BP86790 482 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 CCZ1P86791 482 aaPredicted RBP14.1□□□□□ -0.15
USP28-209ENST00000540925 HLTFQ14527 1009 aaKnown RBP eCLIP14.1□□□□□ -0.15
USP28-209ENST00000540925 PYCR3Q53H96 274 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 SIRPB2Q5JXA9 342 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 CERCAMQ5T4B2 595 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 PID1Q7Z2X4 250 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 TAF8Q7Z7C8 310 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 CDKL3Q8IVW4 592 aaPredicted RBP14.1□□□□□ -0.15
USP28-209ENST00000540925 LRRC8AQ8IWT6 810 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 TTC30BQ8N4P2 665 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 UBL4BQ8N7F7 174 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 CCDC112Q8NEF3 446 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 CCHCR1Q8TD31 782 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 SRPK1Q96SB4 655 aaKnown RBP14.1□□□□□ -0.15
USP28-209ENST00000540925 FAM118BQ9BPY3 351 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 TSGA10Q9BZW7 698 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 CCDC86Q9H6F5 360 aaKnown RBP14.1□□□□□ -0.15
USP28-209ENST00000540925 SPATS2LQ9NUQ6 558 aaKnown RBP14.1□□□□□ -0.15
USP28-209ENST00000540925 SHOC2Q9UQ13 582 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 TMEM98Q9Y2Y6 226 aa14.1□□□□□ -0.15
USP28-209ENST00000540925 SETXQ7Z333 2677 aaKnown RBP14.1□□□□□ -0.15
USP28-209ENST00000540925 TCRBV7S2A1N4TA0A589 114 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 GOLGA6CA6NDK9 693 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 GOLGA6BA6NDN3 693 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 SRRM3A6NNA2 597 aaPredicted RBP14.09□□□□□ -0.15
USP28-209ENST00000540925 TCEA3O75764 348 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 FGF1P05230 155 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 GOLGA6DP0CG33 693 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 BPIP17213 487 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 CETN2P41208 172 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 CHRNA4P43681 627 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 GNPDA1P46926 289 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 CTBSQ01459 385 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 MSLNQ13421 630 aaPredicted RBP14.09□□□□□ -0.15
USP28-209ENST00000540925 SLC1A5Q15758 541 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 ANKRD20A2Q5SQ80 823 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 ANKRD20A1Q5TYW2 823 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 ANKRD20A3Q5VUR7 823 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 PDPK2PQ6A1A2 396 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms