RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 VNN2O95498 520 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 AP2A1O95782 977 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 LTA4HP09960 611 aaKnown RBP8.74□□□□□ -1.01
YBX3-208ENST00000540447 MMP8P22894 467 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 CHMP24386 653 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 HOXD11P31277 338 aaPredicted RBP8.74□□□□□ -1.01
YBX3-208ENST00000540447 PPATQ06203 517 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 DAG1Q14118 895 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 POU6F1Q14863 301 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ALG1LQ6GMV1 187 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 TCEAL6Q6IPX3 200 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 USP30Q70CQ3 517 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 LINGO2Q7L985 606 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 TMEM126BQ8IUX1 230 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 SLC41A1Q8IVJ1 513 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ZNF567Q8N184 647 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 RHBDF1Q96CC6 855 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ERVK-6Q9BXR3 956 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 GPR63Q9BZJ6 419 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 C1orf21Q9H246 121 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.74□□□□□ -1.01
YBX3-208ENST00000540447 ERVK-18Q9QC07 812 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 OAZ3Q9UMX2 235 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 POLHQ9Y253 713 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 BTRCQ9Y297 605 aa8.74□□□□□ -1.01
YBX3-208ENST00000540447 ISM1B1AKI9 464 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 DLGAP1O14490 977 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 EPB42P16452 691 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 GRK4P32298 578 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 RPL22P35268 128 aaKnown RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 PBX1P40424 430 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 MARCKSL1P49006 195 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 PLD1Q13393 1074 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 CBFBQ13951 182 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 KLHL26Q53HC5 615 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 GRAMD2AQ8IUY3 354 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 OR52L1Q8NGH7 329 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 SLC44A1Q8WWI5 657 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 RUSC1Q9BVN2 902 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 RGCCQ9H4X1 137 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 C14orf119Q9NWQ9 140 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 HCN2Q9UL51 889 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 TLL2Q9Y6L7 1015 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 ZNF804BA4D1E1 1349 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 APOC4-APOC2K7ER74 178 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 SLC22A3O75751 556 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 IFNA17P01571 189 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 APOC2P02655 101 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 COX7A2P14406 83 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 HNRNPLP14866 589 aaKnown RBP eCLIP8.73□□□□□ -1.01
YBX3-208ENST00000540447 DGKQP52824 942 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 GPSM2P81274 684 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 GRK1Q15835 563 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 C4orf46Q504U0 113 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 UBQLNLQ8IYU4 475 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 NT5C1AQ9BXI3 368 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 CST11Q9H112 138 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 CNTNAP5Q8WYK1 1306 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 H3BNH8 94 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 TBX3O15119 743 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 SUV39H1O43463 412 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 PCDHGA12O60330 932 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 PLIN3O60664 434 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 YWHAQP27348 245 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 HNRNPH3P31942 346 aaKnown RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 RHDQ02161 417 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 DBPQ10586 325 aaPredicted RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 FBXO43Q4G163 708 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 RALGPS2Q86X27 583 aaPredicted RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 SYT12Q8IV01 421 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 CPSF7Q8N684 471 aaKnown RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 KIF12Q96FN5 646 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 OMDQ99983 421 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 MCMBPQ9BTE3 642 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 KCNN2Q9H2S1 579 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 THG1LQ9NWX6 298 aaKnown RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 IQGAP2Q13576 1575 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 LOC100509620A0A075B734 347 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 A0A087WZ62 844 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 E2F3O00716 465 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 PPEF1O14829 653 aaPredicted RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 FSCN2O14926 492 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 PPP5CP53041 499 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 ADGRD1Q6QNK2 874 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 ILDR1Q86SU0 546 aaPredicted RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 HS6ST3Q8IZP7 471 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 HTR3CQ8WXA8 447 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 C3orf49Q96BT1 292 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 HSPA12BQ96MM6 686 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 MRPL57Q9BQC6 102 aaKnown RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 FUZQ9BT04 418 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 ALG9Q9H6U8 611 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 SNX15Q9NRS6 342 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 ZBTB24O43167 697 aaPredicted RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 CABYRO75952 493 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 LSM8O95777 96 aaKnown RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 BMP6P22004 513 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 RGS19P49795 217 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 ATXN1P54253 815 aaKnown RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 PFKFB4Q16877 469 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms