RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 APRTP07741 180 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 ACO1P21399 889 aaKnown RBP12.4□□□□□ -0.42
USP3-203ENST00000538686 CBLP22681 906 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 SHMT1P34896 483 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 GYG1P46976 350 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 NPY2RP49146 381 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 ATP4BP51164 291 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 TEKQ02763 1124 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 TFDP2Q14188 446 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 ANGPT1Q15389 498 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 IMPG1Q17R60 797 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 TXNRD3NBQ6F5E7 133 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 ZYG11AQ6WRX3 759 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 ZNF782Q6ZMW2 699 aaPredicted RBP12.4□□□□□ -0.42
USP3-203ENST00000538686 PIGZQ86VD9 579 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 OR8K5Q8NH50 307 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 CRYGNQ8WXF5 182 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 SAMD11Q96NU1 681 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 GAD1Q99259 594 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 HSD17B14Q9BPX1 270 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 NAT9Q9BTE0 207 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 GTPBP2Q9BX10 602 aaKnown RBP12.4□□□□□ -0.42
USP3-203ENST00000538686 ALOXE3Q9BYJ1 711 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 CCDC90BQ9GZT6 254 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 C6orf62Q9GZU0 229 aaPredicted RBP12.4□□□□□ -0.42
USP3-203ENST00000538686 SLC6A17Q9H1V8 727 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 SLC6A15Q9H2J7 730 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 RANGRFQ9HD47 186 aaPredicted RBP12.4□□□□□ -0.42
USP3-203ENST00000538686 EMC3Q9P0I2 261 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 TMPRSS11EQ9UL52 423 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 USP22Q9UPT9 525 aa12.4□□□□□ -0.42
USP3-203ENST00000538686 KLF2Q9Y5W3 355 aaPredicted RBP12.4□□□□□ -0.42
USP3-203ENST00000538686 DDX60LQ5H9U9 1706 aaKnown RBP12.4□□□□□ -0.42
USP3-203ENST00000538686 PRR23AA6NEV1 266 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 A8MV72 311 aaPredicted RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 TLL1O43897 1013 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 SCO1O75880 301 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 CABYRO75952 493 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 OR2B3O76000 313 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 LSM8O95777 96 aaKnown RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 IFNA14P01570 189 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 C1QBP02746 253 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 ALPLP05186 524 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 CHRNGP07510 517 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 IFI30P13284 250 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 GNA15P30679 374 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 CD68P34810 354 aaPredicted RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 LSM3P62310 102 aaKnown RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 TFAMQ00059 246 aaKnown RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 SLC25A11Q02978 314 aaKnown RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 FOXM1Q08050 763 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 SNRNP35Q16560 246 aaKnown RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 CYP51A1Q16850 503 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 LRRC26Q2I0M4 334 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 AGKQ53H12 422 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 ARL13AQ5H913 290 aaPredicted RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 WDR44Q5JSH3 913 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 C16orf86Q6ZW13 317 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 EFL1Q7Z2Z2 1120 aaKnown RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 KCT2Q8NC54 265 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 MARC2Q969Z3 335 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 PPP1R36Q96LQ0 422 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 CPNE1Q99829 537 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 LXNQ9BS40 222 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 CNPY3Q9BT09 278 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 NMRAL1Q9HBL8 299 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 FBXO40Q9UH90 709 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 FRMPD2Q68DX3 1309 aaPredicted RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 A0A0B4J203 849 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 C6orf229H3BNL8 230 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 HOXB3P14651 431 aaPredicted RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 MAGP20916 626 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 ALDH4A1P30038 563 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 GRIA4P48058 902 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 CLK1P49759 484 aaKnown RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 AP1S2P56377 157 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 GABPAQ06546 454 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 GRM1Q13255 1194 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 EFR3AQ14156 821 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 CACHD1Q5VU97 1274 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 BRAT1Q6PJG6 821 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 CORO6Q6QEF8 472 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 FIP1L1Q6UN15 594 aaKnown RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 SH3BP5LQ7L8J4 393 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 TNS4Q8IZW8 715 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 NLGN4XQ8N0W4 816 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 LRRC47Q8N1G4 583 aaKnown RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 MINDY1Q8N5J2 469 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 FAM110BQ8TC76 370 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 ACSF2Q96CM8 615 aaPredicted RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 PDXPQ96GD0 296 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 SCYL1Q96KG9 808 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 MRM3Q9HC36 420 aaKnown RBP12.39□□□□□ -0.43
USP3-203ENST00000538686 CHRAC1Q9NRG0 131 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 KIF17Q9P2E2 1029 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 ZDHHC2Q9UIJ5 367 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 TPRKBQ9Y3C4 175 aa12.39□□□□□ -0.43
USP3-203ENST00000538686 ATP6AP2A0A1C7CYW4 349 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 TCRBV5S1A1TA0A578 114 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 OR6C70A6NIJ9 312 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms