RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PMEPA1Q969W9 287 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 COX14Q96I36 57 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 SMIM14Q96QK8 99 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 TAAR9Q96RI9 348 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 DPYSL5Q9BPU6 564 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 ARHGAP9Q9BRR9 750 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 TDRD1Q9BXT4 1180 aaKnown RBP11.29□□□□□ -0.6
VPS28-214ENST00000531032 AMACRQ9UHK6 382 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 DNPEPQ9ULA0 475 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 TMEM98Q9Y2Y6 226 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 PLEKHM1Q9Y4G2 1056 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 TLN1Q9Y490 2541 aaKnown RBP11.29□□□□□ -0.6
VPS28-214ENST00000531032 A0A087X0T9 212 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 GOLGA6L19H0YKK7 550 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 MYO1FO00160 1098 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 MATN3O15232 486 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 PRLP01236 227 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 SERPING1P05155 500 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 FAM87AP0C7U9 286 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 FAM228BP0C875 321 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 SFTPCP11686 197 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 ITGB6P18564 788 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 CES1P23141 567 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 PBX1P40424 430 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 EPHB1P54762 984 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 DSC2Q02487 901 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 ITKQ08881 620 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 DPYSL3Q14195 570 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 HADHQ16836 314 aaKnown RBP11.28□□□□□ -0.6
VPS28-214ENST00000531032 CCDC122Q5T0U0 273 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 PRICKLE2Q7Z3G6 844 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 TRIM74Q86UV6 250 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 GALNT13Q8IUC8 556 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 SFRP1Q8N474 314 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 AGBL5Q8NDL9 886 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 EXD1Q8NHP7 514 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 ARRDC2Q8TBH0 407 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 HTR3CQ8WXA8 447 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 NKD1Q969G9 470 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 TSGA13Q96PP4 275 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 LYSMD1Q96S90 227 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 AGAP2Q99490 1192 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 ZNF670Q9BS34 389 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 FUCA2Q9BTY2 467 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 DDA1Q9BW61 102 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 CLMPQ9H6B4 373 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 KCNK4Q9NYG8 393 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 TMEM9Q9P0T7 183 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 VPS18Q9P253 973 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 PDP2Q9P2J9 529 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 CHKBQ9Y259 395 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 BSNQ9UPA5 3926 aa11.28□□□□□ -0.6
VPS28-214ENST00000531032 SPTA1P02549 2419 aa11.27□□□□□ -0.6
VPS28-214ENST00000531032 B4E171 279 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 PYCARD-AS1I3L0S3 204 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 DNAJC6O75061 913 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 WISP1O95388 367 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 CA4P22748 312 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 CCNCP24863 283 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 CSTF2P33240 577 aaKnown RBP eCLIP11.27□□□□□ -0.61
VPS28-214ENST00000531032 TSPAN7P41732 249 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 ATP1A2P50993 1020 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 RPL26P61254 145 aaKnown RBP11.27□□□□□ -0.61
VPS28-214ENST00000531032 CYP4F2P78329 520 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 ZBED6P86452 979 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 TBR1Q16650 682 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 IFI16Q16666 785 aaKnown RBP11.27□□□□□ -0.61
VPS28-214ENST00000531032 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.27□□□□□ -0.61
VPS28-214ENST00000531032 TMEM71Q6P5X7 295 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 MARK2Q7KZI7 788 aaKnown RBP11.27□□□□□ -0.61
VPS28-214ENST00000531032 CCDC112Q8NEF3 446 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 SLC37A2Q8TED4 501 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 ART4Q93070 314 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 FAF2Q96CS3 445 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 WDR24Q96S15 920 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 RIOK2Q9BVS4 552 aaKnown RBP11.27□□□□□ -0.61
VPS28-214ENST00000531032 SLC12A9Q9BXP2 914 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 FAM117AQ9C073 453 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 HAUS2Q9NVX0 235 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 RBM22Q9NW64 420 aaKnown RBP eCLIP11.27□□□□□ -0.61
VPS28-214ENST00000531032 CNOT6Q9ULM6 557 aaKnown RBP11.27□□□□□ -0.61
VPS28-214ENST00000531032 NENFQ9UMX5 172 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 RPL26L1Q9UNX3 145 aaKnown RBP11.27□□□□□ -0.61
VPS28-214ENST00000531032 PCYT1BQ9Y5K3 369 aaPredicted RBP11.27□□□□□ -0.61
VPS28-214ENST00000531032 HEMK1Q9Y5R4 338 aaPredicted RBP11.27□□□□□ -0.61
VPS28-214ENST00000531032 B3GALT1Q9Y5Z6 326 aa11.27□□□□□ -0.61
VPS28-214ENST00000531032 INPP4BO15327 924 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 DUX1O43812 170 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 MAP3K6O95382 1288 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 CLDN7O95471 211 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 EML2O95834 649 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 HLA-DQB2P05538 268 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 MPSTP25325 297 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 UGT1A3P35503 534 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 SSR1P43307 286 aaKnown RBP11.26□□□□□ -0.61
VPS28-214ENST00000531032 KCNC4Q03721 635 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 NIPAL4Q0D2K0 466 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 PDK2Q15119 407 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 ATP13A4Q4VNC1 1196 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 ANKRD20A8PQ5CZ79 823 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms